We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRunx2
ModelRUNX2_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbbYTGTGGYYdb
Best auROC (human)0.837
Best auROC (mouse)0.927
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)25
Aligned words501
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx2 (PEBP2alphaA, CBF-alpha1) {6.4.1.0.1}
MGIMGI:99829
EntrezGeneGeneID:12393
(SSTAR profile)
UniProt IDRUNX2_MOUSE
UniProt ACQ08775
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.70272
0.0005 5.69046
0.0001 7.726649999999999
GTEx tissue expression atlas Runx2 expression
Motifs in JASPAR
MA0511.1 (RUNX2; Homo sapiens)
MA0511.2 (RUNX2; Homo sapiens)
PCM
ACGT
0153.0139.0184.0124.0
0249.0154.094.0203.0
0317.0305.041.0137.0
0416.010.04.0470.0
052.09.0481.08.0
0616.051.013.0420.0
070.00.0499.01.0
0810.02.0483.05.0
094.087.031.0378.0
1011.0118.030.0341.0
11138.024.072.0266.0
1241.0140.0180.0139.0
PWM
ACGT
01-0.8410.1050.383-0.008
02-0.9180.206-0.2810.48
03-1.920.885-1.090.091
04-1.975-2.394-3.1261.315
05-3.573-2.4841.338-2.584
06-1.975-0.879-2.1631.203
07-4.4-4.41.375-3.903
08-2.394-3.5731.343-2.961
09-3.126-0.357-1.3581.098
10-2.311-0.057-1.3890.996
110.098-1.6-0.5430.749
12-1.090.1120.3610.105