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Model info
Transcription factorRUNX3
(GeneCards)
ModelRUNX3_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusbhTGYGGYYdn
Best auROC (human)0.997
Best auROC (mouse)0.972
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words498
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3}
HGNCHGNC:10473
EntrezGeneGeneID:864
(SSTAR profile)
UniProt IDRUNX3_HUMAN
UniProt ACQ13761
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.078875
0.0005 11.656115
0.0001 14.87538
GTEx tissue expression atlas RUNX3 expression
ReMap ChIP-seq dataset list RUNX3 datasets
Motifs in JASPAR
MA0684.1 (RUNX3; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0115.020.017.015.07.055.04.029.055.074.014.038.06.086.018.045.0
0230.00.00.053.011.04.02.0218.04.01.02.046.09.04.06.0108.0
035.01.046.02.01.00.06.02.01.00.09.00.05.07.0403.010.0
042.00.01.09.04.01.00.03.037.081.011.0335.00.00.02.012.0
050.01.037.05.09.02.065.06.00.00.013.01.04.02.0345.08.0
060.01.09.03.00.00.02.03.08.06.0429.017.01.02.012.05.0
071.02.00.06.00.01.00.08.06.055.043.0348.00.03.02.023.0
082.01.02.02.04.014.02.041.06.017.02.020.024.083.044.0234.0
0921.00.010.05.039.08.016.052.019.01.020.010.057.032.062.0146.0
1024.039.058.015.011.014.02.014.024.031.036.017.033.068.052.060.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.717-0.435-0.595-0.717-1.4510.564-1.971-0.070.5640.859-0.7840.197-1.5961.008-0.5390.365
02-0.036-4.397-4.3970.527-1.018-1.971-2.581.936-1.971-3.122-2.580.387-1.211-1.971-1.5961.235
03-1.766-3.1220.387-2.58-3.122-4.397-1.596-2.58-3.122-4.397-1.211-4.397-1.766-1.4512.549-1.11
04-2.58-4.397-3.122-1.211-1.971-3.122-4.397-2.230.1710.949-1.0182.365-4.397-4.397-2.58-0.934
05-4.397-3.1220.171-1.766-1.211-2.580.73-1.596-4.397-4.397-0.856-3.122-1.971-2.582.394-1.324
06-4.397-3.122-1.211-2.23-4.397-4.397-2.58-2.23-1.324-1.5962.612-0.595-3.122-2.58-0.934-1.766
07-3.122-2.58-4.397-1.596-4.397-3.122-4.397-1.324-1.5960.5640.322.403-4.397-2.23-2.58-0.298
08-2.58-3.122-2.58-2.58-1.971-0.784-2.580.273-1.596-0.595-2.58-0.435-0.2560.9730.3432.007
09-0.388-4.397-1.11-1.7660.223-1.324-0.6540.508-0.486-3.122-0.435-1.110.5990.0270.6831.536
10-0.2560.2230.617-0.717-1.018-0.784-2.58-0.784-0.256-0.0040.144-0.5950.0580.7750.5080.65