We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRUNX3
(GeneCards)
ModelRUNX3_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusbhTGYGGYYdn
Best auROC (human)0.997
Best auROC (mouse)0.972
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words498
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3}
HGNCHGNC:10473
EntrezGeneGeneID:864
(SSTAR profile)
UniProt IDRUNX3_HUMAN
UniProt ACQ13761
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.078875
0.0005 11.656115
0.0001 14.87538
GTEx tissue expression atlas RUNX3 expression
ReMap ChIP-seq dataset list RUNX3 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0115.020.017.015.07.055.04.029.055.074.014.038.06.086.018.045.0
0230.00.00.053.011.04.02.0218.04.01.02.046.09.04.06.0108.0
035.01.046.02.01.00.06.02.01.00.09.00.05.07.0403.010.0
042.00.01.09.04.01.00.03.037.081.011.0335.00.00.02.012.0
050.01.037.05.09.02.065.06.00.00.013.01.04.02.0345.08.0
060.01.09.03.00.00.02.03.08.06.0429.017.01.02.012.05.0
071.02.00.06.00.01.00.08.06.055.043.0348.00.03.02.023.0
082.01.02.02.04.014.02.041.06.017.02.020.024.083.044.0234.0
0921.00.010.05.039.08.016.052.019.01.020.010.057.032.062.0146.0
1024.039.058.015.011.014.02.014.024.031.036.017.033.068.052.060.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.717-0.435-0.595-0.717-1.4510.564-1.971-0.070.5640.859-0.7840.197-1.5961.008-0.5390.365
02-0.036-4.397-4.3970.527-1.018-1.971-2.581.936-1.971-3.122-2.580.387-1.211-1.971-1.5961.235
03-1.766-3.1220.387-2.58-3.122-4.397-1.596-2.58-3.122-4.397-1.211-4.397-1.766-1.4512.549-1.11
04-2.58-4.397-3.122-1.211-1.971-3.122-4.397-2.230.1710.949-1.0182.365-4.397-4.397-2.58-0.934
05-4.397-3.1220.171-1.766-1.211-2.580.73-1.596-4.397-4.397-0.856-3.122-1.971-2.582.394-1.324
06-4.397-3.122-1.211-2.23-4.397-4.397-2.58-2.23-1.324-1.5962.612-0.595-3.122-2.58-0.934-1.766
07-3.122-2.58-4.397-1.596-4.397-3.122-4.397-1.324-1.5960.5640.322.403-4.397-2.23-2.58-0.298
08-2.58-3.122-2.58-2.58-1.971-0.784-2.580.273-1.596-0.595-2.58-0.435-0.2560.9730.3432.007
09-0.388-4.397-1.11-1.7660.223-1.324-0.6540.508-0.486-3.122-0.435-1.110.5990.0270.6831.536
10-0.2560.2230.617-0.717-1.018-0.784-2.58-0.784-0.256-0.0040.144-0.5950.0580.7750.5080.65