Model info
| Transcription factor | RUNX3 (GeneCards) | ||||||||
| Model | RUNX3_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bhTGTGGTYd | ||||||||
| Best auROC (human) | 0.997 | ||||||||
| Best auROC (mouse) | 0.966 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 27 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Runt-related factors {6.4.1} | ||||||||
| TF subfamily | Runx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3} | ||||||||
| HGNC | HGNC:10473 | ||||||||
| EntrezGene | GeneID:864 (SSTAR profile) | ||||||||
| UniProt ID | RUNX3_HUMAN | ||||||||
| UniProt AC | Q13761 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RUNX3 expression | ||||||||
| ReMap ChIP-seq dataset list | RUNX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 67.0 | 106.0 | 144.0 | 183.0 |
| 02 | 64.0 | 196.0 | 33.0 | 207.0 |
| 03 | 18.0 | 7.0 | 12.0 | 463.0 |
| 04 | 2.0 | 2.0 | 493.0 | 3.0 |
| 05 | 24.0 | 86.0 | 4.0 | 386.0 |
| 06 | 1.0 | 0.0 | 498.0 | 1.0 |
| 07 | 0.0 | 2.0 | 497.0 | 1.0 |
| 08 | 0.0 | 27.0 | 18.0 | 455.0 |
| 09 | 9.0 | 94.0 | 34.0 | 363.0 |
| 10 | 140.0 | 18.0 | 87.0 | 255.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.613 | -0.163 | 0.14 | 0.377 |
| 02 | -0.658 | 0.445 | -1.298 | 0.5 |
| 03 | -1.868 | -2.694 | -2.234 | 1.3 |
| 04 | -3.573 | -3.573 | 1.363 | -3.325 |
| 05 | -1.6 | -0.368 | -3.126 | 1.119 |
| 06 | -3.903 | -4.4 | 1.373 | -3.903 |
| 07 | -4.4 | -3.573 | 1.371 | -3.903 |
| 08 | -4.4 | -1.489 | -1.868 | 1.283 |
| 09 | -2.484 | -0.281 | -1.27 | 1.058 |
| 10 | 0.112 | -1.868 | -0.357 | 0.707 |