We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRunx3
ModelRUNX3_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusbbhTGTGGTYdb
Best auROC (human)0.996
Best auROC (mouse)0.975
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words500
TF familyRunt-related factors {6.4.1}
TF subfamilyRunx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3}
MGIMGI:102672
EntrezGene
UniProt IDRUNX3_MOUSE
UniProt ACQ64131
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.31011
0.0005 5.424365
0.0001 7.711815
GTEx tissue expression atlas Runx3 expression
Motifs in JASPAR
MA0684.1 (RUNX3; Homo sapiens)
PCM
ACGT
0170.094.0220.0116.0
0233.0114.0232.0121.0
0373.0270.030.0127.0
049.07.05.0479.0
051.02.0496.01.0
0621.066.01.0412.0
072.01.0495.02.0
080.03.0496.01.0
090.049.042.0409.0
1017.0126.044.0313.0
11163.027.093.0217.0
1264.0128.0207.0101.0
PWM
ACGT
01-0.57-0.2810.56-0.074
02-1.298-0.0910.613-0.032
03-0.5290.763-1.3890.016
04-2.484-2.694-2.9611.334
05-3.903-3.5731.369-3.903
06-1.725-0.628-3.9031.184
07-3.573-3.9031.367-3.573
08-4.4-3.3251.369-3.903
09-4.4-0.918-1.0671.177
10-1.920.008-1.0220.91
110.263-1.489-0.2910.546
12-0.6580.0230.5-0.21