We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRXRA
(GeneCards)
ModelRXRA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
A
Motif rank
0
ConsensusnvdnndnnddvnSWRAGGKCAnnbn
Best auROC (human)0.9
Best auROC (mouse)0.928
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
HGNCHGNC:10477
EntrezGeneGeneID:6256
(SSTAR profile)
UniProt IDRXRA_HUMAN
UniProt ACP19793
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.74606
0.0005 11.585910000000002
0.0001 15.320910000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.021.087.014.052.019.012.028.036.042.044.012.031.012.054.011.0
0228.021.060.034.043.021.014.016.052.022.091.032.015.08.032.010.0
0341.012.051.034.027.09.010.026.040.028.078.051.022.024.018.028.0
0459.030.033.08.033.018.08.014.042.039.044.032.020.043.064.012.0
0565.022.038.029.075.020.016.019.040.012.051.046.015.011.026.014.0
0652.039.065.039.017.018.07.023.035.033.037.026.017.023.045.023.0
0743.014.040.024.037.023.013.040.026.028.047.053.016.025.045.025.0
0849.013.048.012.053.09.07.021.045.018.058.024.038.09.079.016.0
0935.09.0116.025.032.08.04.05.068.013.089.022.014.011.039.09.0
1019.039.078.013.012.011.02.016.048.029.0152.019.010.07.032.012.0
1115.024.031.019.030.029.07.020.044.056.0108.056.014.015.014.017.0
127.063.027.06.07.075.015.027.09.096.032.023.04.074.022.012.0
1318.01.04.04.0241.026.03.038.062.014.02.018.036.011.019.02.0
14142.042.0165.08.038.05.06.03.010.04.013.01.014.08.038.02.0
15182.01.019.02.058.00.00.01.0202.00.019.01.010.00.04.00.0
162.00.0450.00.00.01.00.00.01.00.041.00.00.00.04.00.0
171.00.02.00.00.00.01.00.032.06.0396.061.00.00.00.00.0
184.02.013.014.01.00.00.05.018.056.073.0252.01.023.03.034.0
190.021.02.01.00.077.02.02.03.076.04.06.06.0241.032.026.0
207.01.01.00.0401.04.03.07.036.01.02.01.031.00.03.01.0
21107.0139.0167.062.03.00.01.02.00.03.03.03.01.03.03.02.0
2237.08.033.033.061.09.014.061.041.034.062.037.010.010.030.019.0
234.021.0107.017.017.016.014.014.020.026.072.021.08.019.0102.021.0
2412.016.015.06.039.019.03.021.092.071.091.041.09.019.022.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.258-0.391.018-0.7860.506-0.488-0.936-0.1060.1420.2940.341-0.936-0.006-0.9360.544-1.02
02-0.106-0.390.6480.0850.318-0.39-0.786-0.6560.506-0.3441.0630.025-0.719-1.3260.025-1.112
030.271-0.9360.4870.085-0.142-1.213-1.112-0.1790.246-0.1060.9090.487-0.344-0.258-0.541-0.106
040.632-0.0380.056-1.3260.056-0.541-1.326-0.7860.2940.2210.3410.025-0.4370.3180.713-0.936
050.728-0.3440.195-0.0720.87-0.437-0.656-0.4880.246-0.9360.4870.385-0.719-1.02-0.179-0.786
060.5060.2210.7280.221-0.597-0.541-1.452-0.30.1140.0560.169-0.179-0.597-0.30.363-0.3
070.318-0.7860.246-0.2580.169-0.3-0.8580.246-0.179-0.1060.4060.525-0.656-0.2180.363-0.218
080.447-0.8580.427-0.9360.525-1.213-1.452-0.390.363-0.5410.615-0.2580.195-1.2130.922-0.656
090.114-1.2131.305-0.2180.025-1.326-1.973-1.7680.773-0.8581.041-0.344-0.786-1.020.221-1.213
10-0.4880.2210.909-0.858-0.936-1.02-2.582-0.6560.427-0.0721.574-0.488-1.112-1.4520.025-0.936
11-0.719-0.258-0.006-0.488-0.038-0.072-1.452-0.4370.3410.581.2330.58-0.786-0.719-0.786-0.597
12-1.4520.697-0.142-1.598-1.4520.87-0.719-0.142-1.2131.1160.025-0.3-1.9730.857-0.344-0.936
13-0.541-3.124-1.973-1.9732.034-0.179-2.2320.1950.681-0.786-2.582-0.5410.142-1.02-0.488-2.582
141.5060.2941.656-1.3260.195-1.768-1.598-2.232-1.112-1.973-0.858-3.124-0.786-1.3260.195-2.582
151.754-3.124-0.488-2.5820.615-4.398-4.398-3.1241.858-4.398-0.488-3.124-1.112-4.398-1.973-4.398
16-2.582-4.3982.658-4.398-4.398-3.124-4.398-4.398-3.124-4.3980.271-4.398-4.398-4.398-1.973-4.398
17-3.124-4.398-2.582-4.398-4.398-4.398-3.124-4.3980.025-1.5982.530.665-4.398-4.398-4.398-4.398
18-1.973-2.582-0.858-0.786-3.124-4.398-4.398-1.768-0.5410.580.8432.079-3.124-0.3-2.2320.085
19-4.398-0.39-2.582-3.124-4.3980.896-2.582-2.582-2.2320.883-1.973-1.598-1.5982.0340.025-0.179
20-1.452-3.124-3.124-4.3982.543-1.973-2.232-1.4520.142-3.124-2.582-3.124-0.006-4.398-2.232-3.124
211.2241.4851.6680.681-2.232-4.398-3.124-2.582-4.398-2.232-2.232-2.232-3.124-2.232-2.232-2.582
220.169-1.3260.0560.0560.665-1.213-0.7860.6650.2710.0850.6810.169-1.112-1.112-0.038-0.488
23-1.973-0.391.224-0.597-0.597-0.656-0.786-0.786-0.437-0.1790.83-0.39-1.326-0.4881.176-0.39
24-0.936-0.656-0.719-1.5980.221-0.488-2.232-0.391.0740.8161.0630.271-1.213-0.488-0.344-0.3