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Model info
Transcription factorRXRA
(GeneCards)
ModelRXRA_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
A
Motif rank
0
ConsensusnvdnndnnddvnSWRAGGKCAnnbn
Best auROC (human)0.9
Best auROC (mouse)0.928
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
HGNCHGNC:10477
EntrezGeneGeneID:6256
(SSTAR profile)
UniProt IDRXRA_HUMAN
UniProt ACP19793
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.74606
0.0005 11.585910000000002
0.0001 15.320910000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.021.087.014.052.019.012.028.036.042.044.012.031.012.054.011.0
0228.021.060.034.043.021.014.016.052.022.091.032.015.08.032.010.0
0341.012.051.034.027.09.010.026.040.028.078.051.022.024.018.028.0
0459.030.033.08.033.018.08.014.042.039.044.032.020.043.064.012.0
0565.022.038.029.075.020.016.019.040.012.051.046.015.011.026.014.0
0652.039.065.039.017.018.07.023.035.033.037.026.017.023.045.023.0
0743.014.040.024.037.023.013.040.026.028.047.053.016.025.045.025.0
0849.013.048.012.053.09.07.021.045.018.058.024.038.09.079.016.0
0935.09.0116.025.032.08.04.05.068.013.089.022.014.011.039.09.0
1019.039.078.013.012.011.02.016.048.029.0152.019.010.07.032.012.0
1115.024.031.019.030.029.07.020.044.056.0108.056.014.015.014.017.0
127.063.027.06.07.075.015.027.09.096.032.023.04.074.022.012.0
1318.01.04.04.0241.026.03.038.062.014.02.018.036.011.019.02.0
14142.042.0165.08.038.05.06.03.010.04.013.01.014.08.038.02.0
15182.01.019.02.058.00.00.01.0202.00.019.01.010.00.04.00.0
162.00.0450.00.00.01.00.00.01.00.041.00.00.00.04.00.0
171.00.02.00.00.00.01.00.032.06.0396.061.00.00.00.00.0
184.02.013.014.01.00.00.05.018.056.073.0252.01.023.03.034.0
190.021.02.01.00.077.02.02.03.076.04.06.06.0241.032.026.0
207.01.01.00.0401.04.03.07.036.01.02.01.031.00.03.01.0
21107.0139.0167.062.03.00.01.02.00.03.03.03.01.03.03.02.0
2237.08.033.033.061.09.014.061.041.034.062.037.010.010.030.019.0
234.021.0107.017.017.016.014.014.020.026.072.021.08.019.0102.021.0
2412.016.015.06.039.019.03.021.092.071.091.041.09.019.022.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.258-0.391.018-0.7860.506-0.488-0.936-0.1060.1420.2940.341-0.936-0.006-0.9360.544-1.02
02-0.106-0.390.6480.0850.318-0.39-0.786-0.6560.506-0.3441.0630.025-0.719-1.3260.025-1.112
030.271-0.9360.4870.085-0.142-1.213-1.112-0.1790.246-0.1060.9090.487-0.344-0.258-0.541-0.106
040.632-0.0380.056-1.3260.056-0.541-1.326-0.7860.2940.2210.3410.025-0.4370.3180.713-0.936
050.728-0.3440.195-0.0720.87-0.437-0.656-0.4880.246-0.9360.4870.385-0.719-1.02-0.179-0.786
060.5060.2210.7280.221-0.597-0.541-1.452-0.30.1140.0560.169-0.179-0.597-0.30.363-0.3
070.318-0.7860.246-0.2580.169-0.3-0.8580.246-0.179-0.1060.4060.525-0.656-0.2180.363-0.218
080.447-0.8580.427-0.9360.525-1.213-1.452-0.390.363-0.5410.615-0.2580.195-1.2130.922-0.656
090.114-1.2131.305-0.2180.025-1.326-1.973-1.7680.773-0.8581.041-0.344-0.786-1.020.221-1.213
10-0.4880.2210.909-0.858-0.936-1.02-2.582-0.6560.427-0.0721.574-0.488-1.112-1.4520.025-0.936
11-0.719-0.258-0.006-0.488-0.038-0.072-1.452-0.4370.3410.581.2330.58-0.786-0.719-0.786-0.597
12-1.4520.697-0.142-1.598-1.4520.87-0.719-0.142-1.2131.1160.025-0.3-1.9730.857-0.344-0.936
13-0.541-3.124-1.973-1.9732.034-0.179-2.2320.1950.681-0.786-2.582-0.5410.142-1.02-0.488-2.582
141.5060.2941.656-1.3260.195-1.768-1.598-2.232-1.112-1.973-0.858-3.124-0.786-1.3260.195-2.582
151.754-3.124-0.488-2.5820.615-4.398-4.398-3.1241.858-4.398-0.488-3.124-1.112-4.398-1.973-4.398
16-2.582-4.3982.658-4.398-4.398-3.124-4.398-4.398-3.124-4.3980.271-4.398-4.398-4.398-1.973-4.398
17-3.124-4.398-2.582-4.398-4.398-4.398-3.124-4.3980.025-1.5982.530.665-4.398-4.398-4.398-4.398
18-1.973-2.582-0.858-0.786-3.124-4.398-4.398-1.768-0.5410.580.8432.079-3.124-0.3-2.2320.085
19-4.398-0.39-2.582-3.124-4.3980.896-2.582-2.582-2.2320.883-1.973-1.598-1.5982.0340.025-0.179
20-1.452-3.124-3.124-4.3982.543-1.973-2.232-1.4520.142-3.124-2.582-3.124-0.006-4.398-2.232-3.124
211.2241.4851.6680.681-2.232-4.398-3.124-2.582-4.398-2.232-2.232-2.232-3.124-2.232-2.232-2.582
220.169-1.3260.0560.0560.665-1.213-0.7860.6650.2710.0850.6810.169-1.112-1.112-0.038-0.488
23-1.973-0.391.224-0.597-0.597-0.656-0.786-0.786-0.437-0.1790.83-0.39-1.326-0.4881.176-0.39
24-0.936-0.656-0.719-1.5980.221-0.488-2.232-0.391.0740.8161.0630.271-1.213-0.488-0.344-0.3