Model info
| Transcription factor | RXRA (GeneCards) | ||||||||
| Model | RXRA_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdRdvddnvRRRGGKSAvdv | ||||||||
| Best auROC (human) | 0.867 | ||||||||
| Best auROC (mouse) | 0.916 | ||||||||
| Peak sets in benchmark (human) | 52 | ||||||||
| Peak sets in benchmark (mouse) | 158 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| HGNC | HGNC:10477 | ||||||||
| EntrezGene | GeneID:6256 (SSTAR profile) | ||||||||
| UniProt ID | RXRA_HUMAN | ||||||||
| UniProt AC | P19793 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RXRA expression | ||||||||
| ReMap ChIP-seq dataset list | RXRA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 127.0 | 112.0 | 204.0 | 57.0 |
| 02 | 151.0 | 46.0 | 207.0 | 96.0 |
| 03 | 78.0 | 44.0 | 303.0 | 75.0 |
| 04 | 119.0 | 46.0 | 184.0 | 151.0 |
| 05 | 122.0 | 121.0 | 188.0 | 69.0 |
| 06 | 234.0 | 21.0 | 159.0 | 86.0 |
| 07 | 101.0 | 72.0 | 240.0 | 87.0 |
| 08 | 143.0 | 90.0 | 168.0 | 99.0 |
| 09 | 118.0 | 173.0 | 168.0 | 41.0 |
| 10 | 290.0 | 15.0 | 130.0 | 65.0 |
| 11 | 174.0 | 34.0 | 278.0 | 14.0 |
| 12 | 352.0 | 7.0 | 137.0 | 4.0 |
| 13 | 33.0 | 5.0 | 455.0 | 7.0 |
| 14 | 8.0 | 20.0 | 424.0 | 48.0 |
| 15 | 24.0 | 17.0 | 150.0 | 309.0 |
| 16 | 22.0 | 395.0 | 57.0 | 26.0 |
| 17 | 454.0 | 18.0 | 19.0 | 9.0 |
| 18 | 127.0 | 88.0 | 227.0 | 58.0 |
| 19 | 198.0 | 62.0 | 157.0 | 83.0 |
| 20 | 122.0 | 72.0 | 267.0 | 39.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.016 | -0.108 | 0.485 | -0.771 |
| 02 | 0.187 | -0.979 | 0.5 | -0.26 |
| 03 | -0.464 | -1.022 | 0.878 | -0.503 |
| 04 | -0.049 | -0.979 | 0.383 | 0.187 |
| 05 | -0.024 | -0.032 | 0.404 | -0.584 |
| 06 | 0.621 | -1.725 | 0.238 | -0.368 |
| 07 | -0.21 | -0.543 | 0.646 | -0.357 |
| 08 | 0.133 | -0.324 | 0.293 | -0.23 |
| 09 | -0.057 | 0.322 | 0.293 | -1.09 |
| 10 | 0.835 | -2.034 | 0.039 | -0.643 |
| 11 | 0.327 | -1.27 | 0.793 | -2.096 |
| 12 | 1.027 | -2.694 | 0.091 | -3.126 |
| 13 | -1.298 | -2.961 | 1.283 | -2.694 |
| 14 | -2.584 | -1.77 | 1.213 | -0.938 |
| 15 | -1.6 | -1.92 | 0.18 | 0.898 |
| 16 | -1.681 | 1.142 | -0.771 | -1.525 |
| 17 | 1.281 | -1.868 | -1.818 | -2.484 |
| 18 | 0.016 | -0.346 | 0.591 | -0.754 |
| 19 | 0.455 | -0.689 | 0.225 | -0.403 |
| 20 | -0.024 | -0.543 | 0.752 | -1.138 |