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Model info
Transcription factorRXRA
(GeneCards)
ModelRXRA_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusvhRAGGTCAb
Best auROC (human)0.861
Best auROC (mouse)0.905
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
HGNCHGNC:10477
EntrezGeneGeneID:6256
(SSTAR profile)
UniProt IDRXRA_HUMAN
UniProt ACP19793
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.307510000000001
0.0005 6.165945000000001
0.0001 7.726990000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
ACGT
01102.0216.0124.058.0
02256.065.057.0122.0
03185.064.0241.010.0
04395.02.095.08.0
0510.02.0486.02.0
066.07.0399.088.0
075.035.050.0410.0
081.0479.013.07.0
09473.06.02.019.0
1088.0112.0208.092.0
PWM
ACGT
01-0.2010.542-0.008-0.754
020.711-0.643-0.771-0.024
030.388-0.6580.651-2.394
041.142-3.573-0.271-2.584
05-2.394-3.5731.349-3.573
06-2.819-2.6941.152-0.346
07-2.961-1.242-0.8981.179
08-3.9031.334-2.163-2.694
091.322-2.819-3.573-1.818
10-0.346-0.1080.504-0.302