We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRXRA
(GeneCards)
ModelRXRA_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
1
ConsensusvhRAGGTCAb
Best auROC (human)0.861
Best auROC (mouse)0.905
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words500
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
HGNCHGNC:10477
EntrezGeneGeneID:6256
(SSTAR profile)
UniProt IDRXRA_HUMAN
UniProt ACP19793
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.307510000000001
0.0005 6.165945000000001
0.0001 7.726990000000001
GTEx tissue expression atlas RXRA expression
ReMap ChIP-seq dataset list RXRA datasets
Motifs in JASPAR
PCM
ACGT
01102.0216.0124.058.0
02256.065.057.0122.0
03185.064.0241.010.0
04395.02.095.08.0
0510.02.0486.02.0
066.07.0399.088.0
075.035.050.0410.0
081.0479.013.07.0
09473.06.02.019.0
1088.0112.0208.092.0
PWM
ACGT
01-0.2010.542-0.008-0.754
020.711-0.643-0.771-0.024
030.388-0.6580.651-2.394
041.142-3.573-0.271-2.584
05-2.394-3.5731.349-3.573
06-2.819-2.6941.152-0.346
07-2.961-1.242-0.8981.179
08-3.9031.334-2.163-2.694
091.322-2.819-3.573-1.818
10-0.346-0.1080.504-0.302