We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
A
Motif rank
0
ConsensusdRRddvddbvdvAGKTCAvRRhvdn
Best auROC (human)0.772
Best auROC (mouse)0.988
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words503
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98214
EntrezGeneGeneID:20181
(SSTAR profile)
UniProt IDRXRA_MOUSE
UniProt ACP28700
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.66601
0.0005 9.83496
0.0001 14.34026
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.015.0114.02.031.021.019.07.038.014.0113.02.015.013.046.06.0
0218.09.091.010.030.013.01.019.044.021.0201.026.04.02.07.04.0
0334.05.045.012.016.06.011.012.093.09.0155.043.015.04.033.07.0
0446.04.0102.06.010.02.05.07.035.010.081.0118.08.06.020.040.0
055.011.080.03.06.08.00.08.036.020.0138.014.04.0117.031.019.0
0616.04.017.014.0118.016.05.017.070.016.0140.023.012.05.018.09.0
0752.044.052.068.07.010.05.019.012.018.032.0118.09.07.018.029.0
0822.014.040.04.020.031.06.022.014.041.035.017.07.0158.046.023.0
0910.017.025.011.0158.033.017.036.037.029.035.026.018.015.025.08.0
1091.020.0100.012.045.014.04.031.052.016.018.016.022.010.033.016.0
1197.015.090.08.021.014.017.08.062.013.077.03.011.012.048.04.0
12154.00.035.02.045.02.05.02.0188.01.039.04.014.00.09.00.0
137.03.0388.03.00.00.03.00.01.00.087.00.00.02.04.02.0
141.00.06.01.00.00.05.00.00.00.0259.0223.00.00.04.01.0
150.00.00.01.00.00.00.00.04.025.013.0232.01.01.03.0220.0
160.05.00.00.01.025.00.00.01.014.01.00.04.0422.015.012.0
176.00.00.00.0459.03.02.02.015.00.00.01.010.01.01.00.0
18259.074.0129.028.01.00.02.01.01.00.02.00.00.00.02.01.0
1930.04.0223.04.020.018.022.014.036.025.058.016.02.012.011.05.0
2017.014.049.08.020.015.07.017.028.017.0243.026.04.08.014.013.0
2121.019.020.09.015.015.02.022.044.078.041.0150.08.011.022.023.0
2221.030.034.03.026.071.013.013.012.018.042.013.08.0142.029.025.0
2317.08.034.08.0173.031.017.040.031.022.039.026.012.011.029.02.0
2444.027.094.068.017.014.07.034.026.025.050.018.04.019.033.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.339-0.7211.285-2.584-0.008-0.392-0.49-1.4540.193-0.7881.276-2.584-0.721-0.860.383-1.6
02-0.543-1.2151.061-1.114-0.04-0.86-3.126-0.490.339-0.3921.851-0.181-1.975-2.584-1.454-1.975
030.083-1.770.361-0.938-0.658-1.6-1.022-0.9381.082-1.2151.5920.316-0.721-1.9750.054-1.454
040.383-1.9751.174-1.6-1.114-2.584-1.77-1.4540.112-1.1140.9451.32-1.328-1.6-0.4390.244
05-1.77-1.0220.932-2.234-1.6-1.328-4.4-1.3280.14-0.4391.476-0.788-1.9751.311-0.008-0.49
06-0.658-1.975-0.599-0.7881.32-0.658-1.77-0.5990.8-0.6581.49-0.302-0.938-1.77-0.543-1.215
070.5040.3390.5040.771-1.454-1.114-1.77-0.49-0.938-0.5430.0231.32-1.215-1.454-0.543-0.074
08-0.346-0.7880.244-1.975-0.439-0.008-1.6-0.346-0.7880.2690.112-0.599-1.4541.6110.383-0.302
09-1.114-0.599-0.22-1.0221.6110.054-0.5990.140.167-0.0740.112-0.181-0.543-0.721-0.22-1.328
101.061-0.4391.155-0.9380.361-0.788-1.975-0.0080.504-0.658-0.543-0.658-0.346-1.1140.054-0.658
111.124-0.7211.05-1.328-0.392-0.788-0.599-1.3280.679-0.860.894-2.234-1.022-0.9380.425-1.975
121.585-4.40.112-2.5840.361-2.584-1.77-2.5841.784-3.1260.219-1.975-0.788-4.4-1.215-4.4
13-1.454-2.2342.508-2.234-4.4-4.4-2.234-4.4-3.126-4.41.016-4.4-4.4-2.584-1.975-2.584
14-3.126-4.4-1.6-3.126-4.4-4.4-1.77-4.4-4.4-4.42.1041.955-4.4-4.4-1.975-3.126
15-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-1.975-0.22-0.861.994-3.126-3.126-2.2341.941
16-4.4-1.77-4.4-4.4-3.126-0.22-4.4-4.4-3.126-0.788-3.126-4.4-1.9752.592-0.721-0.938
17-1.6-4.4-4.4-4.42.676-2.234-2.584-2.584-0.721-4.4-4.4-3.126-1.114-3.126-3.126-4.4
182.1040.8551.408-0.108-3.126-4.4-2.584-3.126-3.126-4.4-2.584-4.4-4.4-4.4-2.584-3.126
19-0.04-1.9751.955-1.975-0.439-0.543-0.346-0.7880.14-0.220.613-0.658-2.584-0.938-1.022-1.77
20-0.599-0.7880.445-1.328-0.439-0.721-1.454-0.599-0.108-0.5992.04-0.181-1.975-1.328-0.788-0.86
21-0.392-0.49-0.439-1.215-0.721-0.721-2.584-0.3460.3390.9070.2691.559-1.328-1.022-0.346-0.302
22-0.392-0.040.083-2.234-0.1810.814-0.86-0.86-0.938-0.5430.293-0.86-1.3281.504-0.074-0.22
23-0.599-1.3280.083-1.3281.701-0.008-0.5990.244-0.008-0.3460.219-0.181-0.938-1.022-0.074-2.584
240.339-0.1441.0930.771-0.599-0.788-1.4540.083-0.181-0.220.465-0.543-1.975-0.490.054-0.439