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Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
A
Motif rank
0
ConsensusdRRddvddbvdvAGKTCAvRRhvdn
Best auROC (human)0.772
Best auROC (mouse)0.988
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words503
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98214
EntrezGeneGeneID:20181
(SSTAR profile)
UniProt IDRXRA_MOUSE
UniProt ACP28700
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.66601
0.0005 9.83496
0.0001 14.34026
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0144.015.0114.02.031.021.019.07.038.014.0113.02.015.013.046.06.0
0218.09.091.010.030.013.01.019.044.021.0201.026.04.02.07.04.0
0334.05.045.012.016.06.011.012.093.09.0155.043.015.04.033.07.0
0446.04.0102.06.010.02.05.07.035.010.081.0118.08.06.020.040.0
055.011.080.03.06.08.00.08.036.020.0138.014.04.0117.031.019.0
0616.04.017.014.0118.016.05.017.070.016.0140.023.012.05.018.09.0
0752.044.052.068.07.010.05.019.012.018.032.0118.09.07.018.029.0
0822.014.040.04.020.031.06.022.014.041.035.017.07.0158.046.023.0
0910.017.025.011.0158.033.017.036.037.029.035.026.018.015.025.08.0
1091.020.0100.012.045.014.04.031.052.016.018.016.022.010.033.016.0
1197.015.090.08.021.014.017.08.062.013.077.03.011.012.048.04.0
12154.00.035.02.045.02.05.02.0188.01.039.04.014.00.09.00.0
137.03.0388.03.00.00.03.00.01.00.087.00.00.02.04.02.0
141.00.06.01.00.00.05.00.00.00.0259.0223.00.00.04.01.0
150.00.00.01.00.00.00.00.04.025.013.0232.01.01.03.0220.0
160.05.00.00.01.025.00.00.01.014.01.00.04.0422.015.012.0
176.00.00.00.0459.03.02.02.015.00.00.01.010.01.01.00.0
18259.074.0129.028.01.00.02.01.01.00.02.00.00.00.02.01.0
1930.04.0223.04.020.018.022.014.036.025.058.016.02.012.011.05.0
2017.014.049.08.020.015.07.017.028.017.0243.026.04.08.014.013.0
2121.019.020.09.015.015.02.022.044.078.041.0150.08.011.022.023.0
2221.030.034.03.026.071.013.013.012.018.042.013.08.0142.029.025.0
2317.08.034.08.0173.031.017.040.031.022.039.026.012.011.029.02.0
2444.027.094.068.017.014.07.034.026.025.050.018.04.019.033.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.339-0.7211.285-2.584-0.008-0.392-0.49-1.4540.193-0.7881.276-2.584-0.721-0.860.383-1.6
02-0.543-1.2151.061-1.114-0.04-0.86-3.126-0.490.339-0.3921.851-0.181-1.975-2.584-1.454-1.975
030.083-1.770.361-0.938-0.658-1.6-1.022-0.9381.082-1.2151.5920.316-0.721-1.9750.054-1.454
040.383-1.9751.174-1.6-1.114-2.584-1.77-1.4540.112-1.1140.9451.32-1.328-1.6-0.4390.244
05-1.77-1.0220.932-2.234-1.6-1.328-4.4-1.3280.14-0.4391.476-0.788-1.9751.311-0.008-0.49
06-0.658-1.975-0.599-0.7881.32-0.658-1.77-0.5990.8-0.6581.49-0.302-0.938-1.77-0.543-1.215
070.5040.3390.5040.771-1.454-1.114-1.77-0.49-0.938-0.5430.0231.32-1.215-1.454-0.543-0.074
08-0.346-0.7880.244-1.975-0.439-0.008-1.6-0.346-0.7880.2690.112-0.599-1.4541.6110.383-0.302
09-1.114-0.599-0.22-1.0221.6110.054-0.5990.140.167-0.0740.112-0.181-0.543-0.721-0.22-1.328
101.061-0.4391.155-0.9380.361-0.788-1.975-0.0080.504-0.658-0.543-0.658-0.346-1.1140.054-0.658
111.124-0.7211.05-1.328-0.392-0.788-0.599-1.3280.679-0.860.894-2.234-1.022-0.9380.425-1.975
121.585-4.40.112-2.5840.361-2.584-1.77-2.5841.784-3.1260.219-1.975-0.788-4.4-1.215-4.4
13-1.454-2.2342.508-2.234-4.4-4.4-2.234-4.4-3.126-4.41.016-4.4-4.4-2.584-1.975-2.584
14-3.126-4.4-1.6-3.126-4.4-4.4-1.77-4.4-4.4-4.42.1041.955-4.4-4.4-1.975-3.126
15-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-1.975-0.22-0.861.994-3.126-3.126-2.2341.941
16-4.4-1.77-4.4-4.4-3.126-0.22-4.4-4.4-3.126-0.788-3.126-4.4-1.9752.592-0.721-0.938
17-1.6-4.4-4.4-4.42.676-2.234-2.584-2.584-0.721-4.4-4.4-3.126-1.114-3.126-3.126-4.4
182.1040.8551.408-0.108-3.126-4.4-2.584-3.126-3.126-4.4-2.584-4.4-4.4-4.4-2.584-3.126
19-0.04-1.9751.955-1.975-0.439-0.543-0.346-0.7880.14-0.220.613-0.658-2.584-0.938-1.022-1.77
20-0.599-0.7880.445-1.328-0.439-0.721-1.454-0.599-0.108-0.5992.04-0.181-1.975-1.328-0.788-0.86
21-0.392-0.49-0.439-1.215-0.721-0.721-2.584-0.3460.3390.9070.2691.559-1.328-1.022-0.346-0.302
22-0.392-0.040.083-2.234-0.1810.814-0.86-0.86-0.938-0.5430.293-0.86-1.3281.504-0.074-0.22
23-0.599-1.3280.083-1.3281.701-0.008-0.5990.244-0.008-0.3460.219-0.181-0.938-1.022-0.074-2.584
240.339-0.1441.0930.771-0.599-0.788-1.4540.083-0.181-0.220.465-0.543-1.975-0.490.054-0.439