Model info
| Transcription factor | Rxra | ||||||||
| Model | RXRA_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 21 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddvdbvvdRAGKTCARGGbYR | ||||||||
| Best auROC (human) | 0.782 | ||||||||
| Best auROC (mouse) | 0.943 | ||||||||
| Peak sets in benchmark (human) | 52 | ||||||||
| Peak sets in benchmark (mouse) | 158 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| MGI | MGI:98214 | ||||||||
| EntrezGene | GeneID:20181 (SSTAR profile) | ||||||||
| UniProt ID | RXRA_MOUSE | ||||||||
| UniProt AC | P28700 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rxra expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 198.0 | 38.0 | 192.0 | 71.0 |
| 02 | 120.0 | 55.0 | 224.0 | 100.0 |
| 03 | 101.0 | 78.0 | 266.0 | 54.0 |
| 04 | 155.0 | 68.0 | 190.0 | 86.0 |
| 05 | 65.0 | 103.0 | 112.0 | 219.0 |
| 06 | 89.0 | 211.0 | 117.0 | 82.0 |
| 07 | 209.0 | 96.0 | 124.0 | 70.0 |
| 08 | 154.0 | 71.0 | 179.0 | 95.0 |
| 09 | 197.0 | 44.0 | 247.0 | 11.0 |
| 10 | 410.0 | 11.0 | 73.0 | 5.0 |
| 11 | 28.0 | 4.0 | 452.0 | 15.0 |
| 12 | 9.0 | 24.0 | 195.0 | 271.0 |
| 13 | 15.0 | 29.0 | 27.0 | 428.0 |
| 14 | 5.0 | 455.0 | 34.0 | 5.0 |
| 15 | 454.0 | 12.0 | 19.0 | 14.0 |
| 16 | 386.0 | 25.0 | 63.0 | 25.0 |
| 17 | 53.0 | 11.0 | 417.0 | 18.0 |
| 18 | 30.0 | 14.0 | 428.0 | 27.0 |
| 19 | 40.0 | 132.0 | 65.0 | 262.0 |
| 20 | 17.0 | 370.0 | 51.0 | 61.0 |
| 21 | 350.0 | 29.0 | 64.0 | 56.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.457 | -1.161 | 0.427 | -0.554 |
| 02 | -0.038 | -0.804 | 0.58 | -0.218 |
| 03 | -0.208 | -0.462 | 0.751 | -0.821 |
| 04 | 0.215 | -0.597 | 0.416 | -0.366 |
| 05 | -0.641 | -0.189 | -0.106 | 0.557 |
| 06 | -0.333 | 0.521 | -0.063 | -0.413 |
| 07 | 0.511 | -0.258 | -0.006 | -0.568 |
| 08 | 0.208 | -0.554 | 0.357 | -0.269 |
| 09 | 0.452 | -1.02 | 0.677 | -2.309 |
| 10 | 1.181 | -2.309 | -0.527 | -2.959 |
| 11 | -1.452 | -3.124 | 1.278 | -2.032 |
| 12 | -2.482 | -1.598 | 0.442 | 0.769 |
| 13 | -2.032 | -1.419 | -1.487 | 1.224 |
| 14 | -2.959 | 1.285 | -1.268 | -2.959 |
| 15 | 1.283 | -2.232 | -1.816 | -2.094 |
| 16 | 1.121 | -1.56 | -0.671 | -1.56 |
| 17 | -0.84 | -2.309 | 1.198 | -1.866 |
| 18 | -1.387 | -2.094 | 1.224 | -1.487 |
| 19 | -1.112 | 0.056 | -0.641 | 0.736 |
| 20 | -1.918 | 1.079 | -0.877 | -0.703 |
| 21 | 1.024 | -1.419 | -0.656 | -0.786 |