Model info
| Transcription factor | Rxra | ||||||||
| Model | RXRA_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vdddvdbvvdRAGKTCAvRRhb | ||||||||
| Best auROC (human) | 0.734 | ||||||||
| Best auROC (mouse) | 0.97 | ||||||||
| Peak sets in benchmark (human) | 52 | ||||||||
| Peak sets in benchmark (mouse) | 158 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| MGI | MGI:98214 | ||||||||
| EntrezGene | GeneID:20181 (SSTAR profile) | ||||||||
| UniProt ID | RXRA_MOUSE | ||||||||
| UniProt AC | P28700 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rxra expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 162.0 | 65.0 | 237.0 | 36.0 |
| 02 | 96.0 | 60.0 | 276.0 | 68.0 |
| 03 | 165.0 | 28.0 | 243.0 | 64.0 |
| 04 | 110.0 | 24.0 | 206.0 | 160.0 |
| 05 | 58.0 | 137.0 | 274.0 | 31.0 |
| 06 | 208.0 | 31.0 | 198.0 | 63.0 |
| 07 | 76.0 | 79.0 | 119.0 | 226.0 |
| 08 | 75.0 | 235.0 | 126.0 | 64.0 |
| 09 | 251.0 | 84.0 | 100.0 | 65.0 |
| 10 | 231.0 | 56.0 | 151.0 | 62.0 |
| 11 | 230.0 | 28.0 | 225.0 | 17.0 |
| 12 | 395.0 | 2.0 | 100.0 | 3.0 |
| 13 | 17.0 | 0.0 | 479.0 | 4.0 |
| 14 | 6.0 | 0.0 | 272.0 | 222.0 |
| 15 | 21.0 | 19.0 | 27.0 | 433.0 |
| 16 | 6.0 | 467.0 | 16.0 | 11.0 |
| 17 | 487.0 | 5.0 | 3.0 | 5.0 |
| 18 | 282.0 | 63.0 | 106.0 | 49.0 |
| 19 | 93.0 | 47.0 | 329.0 | 31.0 |
| 20 | 75.0 | 38.0 | 333.0 | 54.0 |
| 21 | 89.0 | 127.0 | 88.0 | 196.0 |
| 22 | 69.0 | 273.0 | 84.0 | 74.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.256 | -0.643 | 0.634 | -1.215 |
| 02 | -0.26 | -0.721 | 0.785 | -0.599 |
| 03 | 0.275 | -1.454 | 0.659 | -0.658 |
| 04 | -0.126 | -1.6 | 0.495 | 0.244 |
| 05 | -0.754 | 0.091 | 0.778 | -1.358 |
| 06 | 0.504 | -1.358 | 0.455 | -0.673 |
| 07 | -0.49 | -0.452 | -0.049 | 0.587 |
| 08 | -0.503 | 0.626 | 0.008 | -0.658 |
| 09 | 0.691 | -0.392 | -0.22 | -0.643 |
| 10 | 0.608 | -0.788 | 0.187 | -0.689 |
| 11 | 0.604 | -1.454 | 0.582 | -1.92 |
| 12 | 1.142 | -3.573 | -0.22 | -3.325 |
| 13 | -1.92 | -4.4 | 1.334 | -3.126 |
| 14 | -2.819 | -4.4 | 0.771 | 0.569 |
| 15 | -1.725 | -1.818 | -1.489 | 1.234 |
| 16 | -2.819 | 1.309 | -1.975 | -2.311 |
| 17 | 1.351 | -2.961 | -3.325 | -2.961 |
| 18 | 0.807 | -0.673 | -0.163 | -0.918 |
| 19 | -0.291 | -0.958 | 0.96 | -1.358 |
| 20 | -0.503 | -1.163 | 0.972 | -0.823 |
| 21 | -0.335 | 0.016 | -0.346 | 0.445 |
| 22 | -0.584 | 0.774 | -0.392 | -0.516 |