We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
2
ConsensusRRGGTCAdRR
Best auROC (human)0.784
Best auROC (mouse)0.963
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words365
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98214
EntrezGeneGeneID:20181
(SSTAR profile)
UniProt IDRXRA_MOUSE
UniProt ACP28700
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.857984999999999
0.0005 5.937825
0.0001 8.074285
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
ACGT
01122.015.0216.012.0
02230.02.0131.02.0
032.01.0361.01.0
042.00.0265.098.0
050.07.01.0357.0
065.0345.015.00.0
07363.01.01.00.0
08201.031.090.043.0
0988.030.0231.016.0
1074.056.0219.016.0
PWM
ACGT
010.286-1.7280.852-1.929
020.915-3.2840.357-3.284
03-3.284-3.6231.363-3.623
04-3.284-4.1411.0560.07
05-4.141-2.393-3.6231.352
06-2.6621.318-1.728-4.141
071.369-3.623-3.623-4.141
080.781-1.049-0.014-0.735
09-0.036-1.080.919-1.669
10-0.206-0.4780.866-1.669