Check the newest release v12
Model info
Transcription factorRxra
ModelRXRA_MOUSE.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
2
ConsensusRRGGTCAdRR
Best auROC (human)0.784
Best auROC (mouse)0.963
Peak sets in benchmark (human)52
Peak sets in benchmark (mouse)158
Aligned words365
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98214
EntrezGeneGeneID:20181
(SSTAR profile)
UniProt IDRXRA_MOUSE
UniProt ACP28700
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.857984999999999
0.0005 5.937825
0.0001 8.074285
GTEx tissue expression atlas Rxra expression
Motifs in JASPAR
MA0065.1 (PPARG::RXRA; Homo sapiens)
MA0074.1 (RXRA::VDR; Homo sapiens)
MA0115.1 (NR1H2::RXRA; Homo sapiens)
MA0065.2 (Pparg::Rxra; Mus musculus)
MA0159.1 (RARA::RXRA; Homo sapiens)
MA0512.1 (Rxra; Mus musculus)
MA0494.1 (Nr1h3::Rxra; Mus musculus)
MA0512.2 (Rxra; Mus musculus)
MA1146.1 (NR1A4::RXRA; Homo sapiens)
MA1147.1 (NR4A2::RXRA; Homo sapiens)
MA1148.1 (PPARA::RXRA; Homo sapiens)
PCM
ACGT
01122.015.0216.012.0
02230.02.0131.02.0
032.01.0361.01.0
042.00.0265.098.0
050.07.01.0357.0
065.0345.015.00.0
07363.01.01.00.0
08201.031.090.043.0
0988.030.0231.016.0
1074.056.0219.016.0
PWM
ACGT
010.286-1.7280.852-1.929
020.915-3.2840.357-3.284
03-3.284-3.6231.363-3.623
04-3.284-4.1411.0560.07
05-4.141-2.393-3.6231.352
06-2.6621.318-1.728-4.141
071.369-3.623-3.623-4.141
080.781-1.049-0.014-0.735
09-0.036-1.080.919-1.669
10-0.206-0.4780.866-1.669