RXRB_HUMAN.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

RXRB
(GeneCards)

Model

RXRB_HUMAN.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

10

Quality

C

Motif rank

0

Consensus

WSAGGTCAbd

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

30

TF family

RXR-related receptors (NR2) {2.1.3}

TF subfamily

Retinoid X receptors (NR2B) {2.1.3.1}

HGNC

EntrezGene

GeneID:6257
(SSTAR profile)

UniProt ID

UniProt AC

P28702
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.051119999999999
0.0005	5.738455
0.0001	7.072445

GTEx tissue expression atlas

RXRB expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0855.1 (RXRB; Homo sapiens)

PCM

	A	C	G	T
01	3.714	2.476	3.59	16.219
02	2.848	9.781	13.371	0.0
03	22.038	1.733	2.229	0.0
04	1.114	0.0	22.657	2.229
05	0.0	1.548	21.976	2.476
06	1.114	0.0	1.114	23.771
07	0.433	22.719	1.733	1.114
08	24.886	1.114	0.0	0.0
09	2.476	12.876	7.924	2.724
10	10.338	3.219	8.233	4.21

PWM

	A	C	G	T
01	-0.479	-0.799	-0.507	0.845
02	-0.692	0.371	0.662	-2.195
03	1.139	-1.055	-0.877	-2.195
04	-1.333	-2.195	1.166	-0.877
05	-2.195	-1.13	1.136	-0.799
06	-1.333	-2.195	-1.333	1.212
07	-1.768	1.169	-1.055	-1.333
08	1.257	-1.333	-2.195	-2.195
09	-0.799	0.627	0.178	-0.726
10	0.422	-0.595	0.213	-0.376