RXRG_HUMAN.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

RXRG
(GeneCards)

Model

RXRG_HUMAN.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

13

Quality

B

Motif rank

0

Consensus

bGTCAAAGGTCAh

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

584

TF family

RXR-related receptors (NR2) {2.1.3}

TF subfamily

Retinoid X receptors (NR2B) {2.1.3.1}

HGNC

EntrezGene

GeneID:6258
(SSTAR profile)

UniProt ID

UniProt AC

P48443
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	1.8746099999999997
0.0005	3.343215
0.0001	6.2589950000000005

GTEx tissue expression atlas

RXRG expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0856.1 (RXRG; Homo sapiens)

MA1149.1 (RARA::RXRG; Homo sapiens)

PCM

	A	C	G	T
01	102.04	102.465	345.61	102.889
02	0.849	0.424	571.639	80.092
03	4.069	9.379	50.467	589.09
04	3.82	583.765	13.179	52.24
05	653.004	0.0	0.0	0.0
06	594.166	2.619	47.945	8.274
07	633.223	0.849	18.932	0.0
08	0.0	0.424	651.731	0.849
09	0.424	0.424	596.144	56.011
10	9.195	11.501	15.811	616.497
11	2.971	561.382	49.464	39.186
12	605.969	3.644	42.718	0.673
13	190.564	215.256	67.043	180.142

PWM

	A	C	G	T
01	-0.464	-0.46	0.745	-0.456
02	-4.201	-4.39	1.246	-0.702
03	-3.367	-2.707	-1.152	1.276
04	-3.411	1.267	-2.411	-1.119
05	1.379	-4.622	-4.622	-4.622
06	1.285	-3.661	-1.202	-2.813
07	1.348	-4.201	-2.082	-4.622
08	-4.622	-4.39	1.377	-4.201
09	-4.39	-4.39	1.288	-1.051
10	-2.724	-2.531	-2.247	1.322
11	-3.581	1.228	-1.172	-1.396
12	1.304	-3.444	-1.313	-4.275
13	0.153	0.274	-0.876	0.098