We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRXRG
(GeneCards)
ModelRXRG_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
B
Motif rank
0
ConsensusbGTCAAAGGTCAh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words584
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
HGNCHGNC:10479
EntrezGeneGeneID:6258
(SSTAR profile)
UniProt IDRXRG_HUMAN
UniProt ACP48443
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.8746099999999997
0.0005 3.343215
0.0001 6.2589950000000005
GTEx tissue expression atlas RXRG expression
ReMap ChIP-seq dataset list RXRG datasets
Motifs in JASPAR
PCM
ACGT
01102.04102.465345.61102.889
020.8490.424571.63980.092
034.0699.37950.467589.09
043.82583.76513.17952.24
05653.0040.00.00.0
06594.1662.61947.9458.274
07633.2230.84918.9320.0
080.00.424651.7310.849
090.4240.424596.14456.011
109.19511.50115.811616.497
112.971561.38249.46439.186
12605.9693.64442.7180.673
13190.564215.25667.043180.142
PWM
ACGT
01-0.464-0.460.745-0.456
02-4.201-4.391.246-0.702
03-3.367-2.707-1.1521.276
04-3.4111.267-2.411-1.119
051.379-4.622-4.622-4.622
061.285-3.661-1.202-2.813
071.348-4.201-2.082-4.622
08-4.622-4.391.377-4.201
09-4.39-4.391.288-1.051
10-2.724-2.531-2.2471.322
11-3.5811.228-1.172-1.396
121.304-3.444-1.313-4.275
130.1530.274-0.8760.098