Model info
| Transcription factor | Rxrg | ||||||||
| Model | RXRG_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vddvdbbvdRAGKTCAAGGYYW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.952 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 281 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| MGI | MGI:98216 | ||||||||
| EntrezGene | GeneID:20183 (SSTAR profile) | ||||||||
| UniProt ID | RXRG_MOUSE | ||||||||
| UniProt AC | P28705 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rxrg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 65.0 | 39.0 | 149.0 | 28.0 |
| 02 | 133.0 | 20.0 | 87.0 | 41.0 |
| 03 | 63.0 | 32.0 | 132.0 | 54.0 |
| 04 | 53.0 | 42.0 | 153.0 | 33.0 |
| 05 | 103.0 | 33.0 | 108.0 | 37.0 |
| 06 | 38.0 | 41.0 | 50.0 | 152.0 |
| 07 | 25.0 | 151.0 | 67.0 | 38.0 |
| 08 | 146.0 | 47.0 | 55.0 | 33.0 |
| 09 | 77.0 | 38.0 | 121.0 | 45.0 |
| 10 | 116.0 | 18.0 | 141.0 | 6.0 |
| 11 | 237.0 | 0.0 | 39.0 | 5.0 |
| 12 | 5.0 | 0.0 | 275.0 | 1.0 |
| 13 | 5.0 | 4.0 | 107.0 | 165.0 |
| 14 | 3.0 | 14.0 | 6.0 | 258.0 |
| 15 | 5.0 | 270.0 | 4.0 | 2.0 |
| 16 | 273.0 | 0.0 | 6.0 | 2.0 |
| 17 | 228.0 | 4.0 | 38.0 | 11.0 |
| 18 | 19.0 | 4.0 | 257.0 | 1.0 |
| 19 | 13.0 | 7.0 | 255.0 | 6.0 |
| 20 | 25.0 | 60.0 | 31.0 | 165.0 |
| 21 | 8.0 | 215.0 | 22.0 | 36.0 |
| 22 | 222.0 | 11.0 | 23.0 | 25.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.076 | -0.573 | 0.741 | -0.891 |
| 02 | 0.629 | -1.208 | 0.21 | -0.525 |
| 03 | -0.107 | -0.763 | 0.621 | -0.257 |
| 04 | -0.275 | -0.501 | 0.768 | -0.734 |
| 05 | 0.376 | -0.734 | 0.423 | -0.624 |
| 06 | -0.598 | -0.525 | -0.332 | 0.761 |
| 07 | -0.998 | 0.755 | -0.046 | -0.598 |
| 08 | 0.721 | -0.392 | -0.239 | -0.734 |
| 09 | 0.09 | -0.598 | 0.535 | -0.434 |
| 10 | 0.494 | -1.306 | 0.687 | -2.269 |
| 11 | 1.202 | -3.929 | -0.573 | -2.414 |
| 12 | -2.414 | -3.929 | 1.35 | -3.392 |
| 13 | -2.414 | -2.584 | 0.414 | 0.843 |
| 14 | -2.788 | -1.537 | -2.269 | 1.286 |
| 15 | -2.414 | 1.332 | -2.584 | -3.045 |
| 16 | 1.343 | -3.929 | -2.269 | -3.045 |
| 17 | 1.164 | -2.584 | -0.598 | -1.753 |
| 18 | -1.256 | -2.584 | 1.283 | -3.392 |
| 19 | -1.604 | -2.143 | 1.275 | -2.269 |
| 20 | -0.998 | -0.154 | -0.793 | 0.843 |
| 21 | -2.03 | 1.105 | -1.119 | -0.65 |
| 22 | 1.137 | -1.753 | -1.077 | -0.998 |