Transcription factor | Rxrg | ||||||||
Model | RXRG_MOUSE.H11MO.1.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | B | ||||||||
Motif rank | 1 | ||||||||
Consensus | RAGKTCARRS | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.946 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 501 | ||||||||
TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
MGI | MGI:98216 | ||||||||
EntrezGene | GeneID:20183 (SSTAR profile) | ||||||||
UniProt ID | RXRG_MOUSE | ||||||||
UniProt AC | P28705 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Rxrg expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 195.0 | 41.0 | 241.0 | 22.0 |
02 | 395.0 | 5.0 | 97.0 | 2.0 |
03 | 8.0 | 12.0 | 465.0 | 14.0 |
04 | 16.0 | 19.0 | 237.0 | 227.0 |
05 | 12.0 | 19.0 | 48.0 | 420.0 |
06 | 13.0 | 432.0 | 44.0 | 10.0 |
07 | 433.0 | 21.0 | 20.0 | 25.0 |
08 | 327.0 | 36.0 | 113.0 | 23.0 |
09 | 67.0 | 25.0 | 382.0 | 25.0 |
10 | 43.0 | 60.0 | 369.0 | 27.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.442 | -1.088 | 0.653 | -1.679 |
02 | 1.144 | -2.959 | -0.248 | -3.571 |
03 | -2.582 | -2.232 | 1.307 | -2.094 |
04 | -1.973 | -1.816 | 0.636 | 0.593 |
05 | -2.232 | -1.816 | -0.936 | 1.205 |
06 | -2.161 | 1.233 | -1.02 | -2.392 |
07 | 1.236 | -1.723 | -1.768 | -1.56 |
08 | 0.956 | -1.213 | -0.098 | -1.638 |
09 | -0.611 | -1.56 | 1.111 | -1.56 |
10 | -1.042 | -0.719 | 1.076 | -1.487 |