We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRxrg
ModelRXRG_MOUSE.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
1
ConsensusRAGKTCARRS
Best auROC (human)
Best auROC (mouse)0.946
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words501
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98216
EntrezGeneGeneID:20183
(SSTAR profile)
UniProt IDRXRG_MOUSE
UniProt ACP28705
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.243815
0.0005 6.04312
0.0001 7.747915
GTEx tissue expression atlas Rxrg expression
Motifs in JASPAR
MA0856.1 (RXRG; Homo sapiens)
MA1149.1 (RARA::RXRG; Homo sapiens)
PCM
ACGT
01195.041.0241.022.0
02395.05.097.02.0
038.012.0465.014.0
0416.019.0237.0227.0
0512.019.048.0420.0
0613.0432.044.010.0
07433.021.020.025.0
08327.036.0113.023.0
0967.025.0382.025.0
1043.060.0369.027.0
PWM
ACGT
010.442-1.0880.653-1.679
021.144-2.959-0.248-3.571
03-2.582-2.2321.307-2.094
04-1.973-1.8160.6360.593
05-2.232-1.816-0.9361.205
06-2.1611.233-1.02-2.392
071.236-1.723-1.768-1.56
080.956-1.213-0.098-1.638
09-0.611-1.561.111-1.56
10-1.042-0.7191.076-1.487