Model info
| Transcription factor | Sall1 | ||||||||
| Model | SALL1_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddvRGGSWGKGRbvddv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.799 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | Sal-like factors {2.3.4.3} | ||||||||
| MGI | MGI:1889585 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | SALL1_MOUSE | ||||||||
| UniProt AC | Q9ER74 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sall1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 116.0 | 43.0 | 221.0 | 120.0 |
| 02 | 114.0 | 45.0 | 234.0 | 107.0 |
| 03 | 55.0 | 133.0 | 271.0 | 41.0 |
| 04 | 232.0 | 3.0 | 186.0 | 79.0 |
| 05 | 41.0 | 1.0 | 447.0 | 11.0 |
| 06 | 19.0 | 8.0 | 445.0 | 28.0 |
| 07 | 14.0 | 161.0 | 320.0 | 5.0 |
| 08 | 192.0 | 13.0 | 15.0 | 280.0 |
| 09 | 8.0 | 5.0 | 477.0 | 10.0 |
| 10 | 95.0 | 13.0 | 288.0 | 104.0 |
| 11 | 49.0 | 6.0 | 417.0 | 28.0 |
| 12 | 58.0 | 41.0 | 392.0 | 9.0 |
| 13 | 66.0 | 184.0 | 167.0 | 83.0 |
| 14 | 198.0 | 95.0 | 131.0 | 76.0 |
| 15 | 122.0 | 57.0 | 243.0 | 78.0 |
| 16 | 95.0 | 51.0 | 289.0 | 65.0 |
| 17 | 85.0 | 123.0 | 223.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.074 | -1.044 | 0.565 | -0.04 |
| 02 | -0.091 | -1.0 | 0.621 | -0.153 |
| 03 | -0.805 | 0.061 | 0.767 | -1.09 |
| 04 | 0.613 | -3.325 | 0.393 | -0.452 |
| 05 | -1.09 | -3.903 | 1.265 | -2.311 |
| 06 | -1.818 | -2.584 | 1.261 | -1.454 |
| 07 | -2.096 | 0.25 | 0.932 | -2.961 |
| 08 | 0.425 | -2.163 | -2.034 | 0.8 |
| 09 | -2.584 | -2.961 | 1.33 | -2.394 |
| 10 | -0.271 | -2.163 | 0.828 | -0.181 |
| 11 | -0.918 | -2.819 | 1.196 | -1.454 |
| 12 | -0.754 | -1.09 | 1.135 | -2.484 |
| 13 | -0.628 | 0.383 | 0.287 | -0.403 |
| 14 | 0.455 | -0.271 | 0.046 | -0.49 |
| 15 | -0.024 | -0.771 | 0.659 | -0.464 |
| 16 | -0.271 | -0.879 | 0.831 | -0.643 |
| 17 | -0.38 | -0.016 | 0.573 | -0.584 |