We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSALL4
(GeneCards)
ModelSALL4_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusnnhTYWRMAWdWvWRdnvn
Best auROC (human)0.427
Best auROC (mouse)0.937
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)21
Aligned words502
TF familyFactors with multiple dispersed zinc fingers {2.3.4}
TF subfamilySal-like factors {2.3.4.3}
HGNCHGNC:15924
EntrezGeneGeneID:57167
(SSTAR profile)
UniProt IDSALL4_HUMAN
UniProt ACQ9UJQ4
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.93796
0.0005 13.53426
0.0001 16.88136
GTEx tissue expression atlas SALL4 expression
ReMap ChIP-seq dataset list SALL4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0152.036.017.015.035.021.07.022.024.031.025.019.073.049.052.022.0
02109.030.020.025.0104.015.03.015.045.021.021.014.035.09.017.017.0
0321.08.08.0256.08.04.01.062.05.02.013.041.01.04.02.064.0
0413.03.02.017.06.04.01.07.02.05.04.013.015.040.015.0353.0
0513.04.03.016.012.00.00.040.04.00.03.015.0134.07.011.0238.0
0655.022.079.07.01.05.04.01.09.01.07.00.066.014.0210.019.0
0722.0106.01.02.06.036.00.00.044.0224.015.017.06.020.00.01.0
0874.01.03.00.0365.05.010.06.013.01.01.01.015.01.01.03.0
09116.015.032.0304.02.00.01.05.03.00.07.05.01.00.00.09.0
1051.020.030.021.012.01.01.01.018.06.07.09.0116.034.063.0110.0
11120.011.015.051.029.01.00.031.065.04.03.029.037.06.06.092.0
1236.0118.055.042.05.011.04.02.08.015.01.00.027.075.079.022.0
1347.012.09.08.0162.013.02.042.093.021.06.019.051.09.03.03.0
14307.011.025.010.042.08.01.04.09.03.03.05.035.010.015.012.0
15184.017.035.0157.012.05.04.011.020.04.08.012.010.02.011.08.0
16108.011.093.014.013.03.04.08.016.08.024.010.062.029.078.019.0
1753.041.097.08.027.012.08.04.068.021.097.013.012.012.023.04.0
1849.046.050.015.038.020.09.019.075.065.057.028.010.010.07.02.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.5040.14-0.599-0.7210.112-0.392-1.454-0.346-0.26-0.008-0.22-0.490.8410.4450.504-0.346
021.241-0.04-0.439-0.221.194-0.721-2.234-0.7210.361-0.392-0.392-0.7880.112-1.215-0.599-0.599
03-0.392-1.328-1.3282.092-1.328-1.975-3.1260.679-1.77-2.584-0.860.269-3.126-1.975-2.5840.711
04-0.86-2.234-2.584-0.599-1.6-1.975-3.126-1.454-2.584-1.77-1.975-0.86-0.7210.244-0.7212.413
05-0.86-1.975-2.234-0.658-0.938-4.4-4.40.244-1.975-4.4-2.234-0.7211.446-1.454-1.0222.02
060.56-0.3460.92-1.454-3.126-1.77-1.975-3.126-1.215-3.126-1.454-4.40.741-0.7881.895-0.49
07-0.3461.213-3.126-2.584-1.60.14-4.4-4.40.3391.959-0.721-0.599-1.6-0.439-4.4-3.126
080.855-3.126-2.234-4.42.447-1.77-1.114-1.6-0.86-3.126-3.126-3.126-0.721-3.126-3.126-2.234
091.303-0.7210.0232.264-2.584-4.4-3.126-1.77-2.234-4.4-1.454-1.77-3.126-4.4-4.4-1.215
100.485-0.439-0.04-0.392-0.938-3.126-3.126-3.126-0.543-1.6-1.454-1.2151.3030.0830.6951.25
111.336-1.022-0.7210.485-0.074-3.126-4.4-0.0080.726-1.975-2.234-0.0740.167-1.6-1.61.072
120.141.320.560.293-1.77-1.022-1.975-2.584-1.328-0.721-3.126-4.4-0.1440.8680.92-0.346
130.404-0.938-1.215-1.3281.636-0.86-2.5840.2931.082-0.392-1.6-0.490.485-1.215-2.234-2.234
142.274-1.022-0.22-1.1140.293-1.328-3.126-1.975-1.215-2.234-2.234-1.770.112-1.114-0.721-0.938
151.763-0.5990.1121.604-0.938-1.77-1.975-1.022-0.439-1.975-1.328-0.938-1.114-2.584-1.022-1.328
161.231-1.0221.082-0.788-0.86-2.234-1.975-1.328-0.658-1.328-0.26-1.1140.679-0.0740.907-0.49
170.5230.2691.124-1.328-0.144-0.938-1.328-1.9750.771-0.3921.124-0.86-0.938-0.938-0.302-1.975
180.4450.3830.465-0.7210.193-0.439-1.215-0.490.8680.7260.595-0.108-1.114-1.114-1.454-2.584