Model info
| Transcription factor | SCRT1 (GeneCards) | ||||||||
| Model | SCRT1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KCAACAGGTKdbh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 179 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | Snail-like factors {2.3.3.2} | ||||||||
| HGNC | HGNC:15950 | ||||||||
| EntrezGene | GeneID:83482 (SSTAR profile) | ||||||||
| UniProt ID | SCRT1_HUMAN | ||||||||
| UniProt AC | Q9BWW7 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SCRT1 expression | ||||||||
| ReMap ChIP-seq dataset list | SCRT1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.75 | 7.75 | 99.75 | 62.75 |
| 02 | 5.75 | 163.75 | 4.75 | 4.75 |
| 03 | 166.25 | 5.25 | 3.25 | 4.25 |
| 04 | 172.25 | 1.25 | 3.25 | 2.25 |
| 05 | 3.0 | 171.0 | 2.0 | 3.0 |
| 06 | 178.0 | 0.0 | 0.0 | 1.0 |
| 07 | 29.0 | 0.0 | 150.0 | 0.0 |
| 08 | 1.0 | 1.0 | 176.0 | 1.0 |
| 09 | 3.0 | 2.0 | 1.0 | 173.0 |
| 10 | 15.0 | 4.0 | 130.0 | 30.0 |
| 11 | 20.25 | 19.25 | 95.25 | 44.25 |
| 12 | 33.75 | 36.75 | 34.75 | 73.75 |
| 13 | 52.5 | 36.5 | 20.5 | 69.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.522 | -1.627 | 0.786 | 0.33 |
| 02 | -1.877 | 1.277 | -2.03 | -2.03 |
| 03 | 1.292 | -1.951 | -2.315 | -2.116 |
| 04 | 1.327 | -2.895 | -2.315 | -2.564 |
| 05 | -2.372 | 1.32 | -2.637 | -2.372 |
| 06 | 1.359 | -3.57 | -3.57 | -2.998 |
| 07 | -0.419 | -3.57 | 1.19 | -3.57 |
| 08 | -2.998 | -2.998 | 1.348 | -2.998 |
| 09 | -2.372 | -2.637 | -2.998 | 1.331 |
| 10 | -1.039 | -2.163 | 1.048 | -0.386 |
| 11 | -0.759 | -0.807 | 0.74 | -0.011 |
| 12 | -0.273 | -0.191 | -0.245 | 0.488 |
| 13 | 0.156 | -0.197 | -0.748 | 0.43 |