We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSCRT1
(GeneCards)
ModelSCRT1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusKCAACAGGTKdbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words179
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
HGNCHGNC:15950
EntrezGeneGeneID:83482
(SSTAR profile)
UniProt IDSCRT1_HUMAN
UniProt ACQ9BWW7
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.84541
0.0005 4.951575
0.0001 7.311014999999999
GTEx tissue expression atlas SCRT1 expression
ReMap ChIP-seq dataset list SCRT1 datasets
Motifs in JASPAR
PCM
ACGT
018.757.7599.7562.75
025.75163.754.754.75
03166.255.253.254.25
04172.251.253.252.25
053.0171.02.03.0
06178.00.00.01.0
0729.00.0150.00.0
081.01.0176.01.0
093.02.01.0173.0
1015.04.0130.030.0
1120.2519.2595.2544.25
1233.7536.7534.7573.75
1352.536.520.569.5
PWM
ACGT
01-1.522-1.6270.7860.33
02-1.8771.277-2.03-2.03
031.292-1.951-2.315-2.116
041.327-2.895-2.315-2.564
05-2.3721.32-2.637-2.372
061.359-3.57-3.57-2.998
07-0.419-3.571.19-3.57
08-2.998-2.9981.348-2.998
09-2.372-2.637-2.9981.331
10-1.039-2.1631.048-0.386
11-0.759-0.8070.74-0.011
12-0.273-0.191-0.2450.488
130.156-0.197-0.7480.43