Model info
| Transcription factor | SCRT2 (GeneCards) | ||||||||
| Model | SCRT2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dhKCAACAGGTKb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 719 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | Snail-like factors {2.3.3.2} | ||||||||
| HGNC | HGNC:15952 | ||||||||
| EntrezGene | GeneID:85508 (SSTAR profile) | ||||||||
| UniProt ID | SCRT2_HUMAN | ||||||||
| UniProt AC | Q9NQ03 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SCRT2 expression | ||||||||
| ReMap ChIP-seq dataset list | SCRT2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 280.5 | 104.5 | 210.5 | 123.5 |
| 02 | 215.25 | 144.25 | 68.25 | 291.25 |
| 03 | 63.5 | 66.5 | 417.5 | 171.5 |
| 04 | 0.0 | 719.0 | 0.0 | 0.0 |
| 05 | 717.0 | 2.0 | 0.0 | 0.0 |
| 06 | 718.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.0 | 719.0 | 0.0 | 0.0 |
| 08 | 718.0 | 0.0 | 1.0 | 0.0 |
| 09 | 41.0 | 0.0 | 677.0 | 1.0 |
| 10 | 1.0 | 0.0 | 718.0 | 0.0 |
| 11 | 0.5 | 0.5 | 0.5 | 717.5 |
| 12 | 61.0 | 15.0 | 515.0 | 128.0 |
| 13 | 107.0 | 148.0 | 304.0 | 160.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.442 | -0.536 | 0.157 | -0.371 |
| 02 | 0.179 | -0.218 | -0.954 | 0.479 |
| 03 | -1.024 | -0.979 | 0.838 | -0.047 |
| 04 | -4.703 | 1.379 | -4.703 | -4.703 |
| 05 | 1.377 | -3.907 | -4.703 | -4.703 |
| 06 | 1.378 | -4.703 | -4.703 | -4.228 |
| 07 | -4.703 | 1.379 | -4.703 | -4.703 |
| 08 | 1.378 | -4.703 | -4.228 | -4.703 |
| 09 | -1.448 | -4.703 | 1.319 | -4.228 |
| 10 | -4.228 | -4.703 | 1.378 | -4.703 |
| 11 | -4.438 | -4.438 | -4.438 | 1.377 |
| 12 | -1.063 | -2.389 | 1.047 | -0.336 |
| 13 | -0.513 | -0.192 | 0.522 | -0.115 |