We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSCRT2
(GeneCards)
ModelSCRT2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusdhKCAACAGGTKb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words719
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
HGNCHGNC:15952
EntrezGeneGeneID:85508
(SSTAR profile)
UniProt IDSCRT2_HUMAN
UniProt ACQ9NQ03
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 0.687065
0.0005 2.58038
0.0001 5.78795
GTEx tissue expression atlas SCRT2 expression
ReMap ChIP-seq dataset list SCRT2 datasets
Motifs in JASPAR
MA0744.1 (SCRT2; Homo sapiens)
PCM
ACGT
01280.5104.5210.5123.5
02215.25144.2568.25291.25
0363.566.5417.5171.5
040.0719.00.00.0
05717.02.00.00.0
06718.00.00.01.0
070.0719.00.00.0
08718.00.01.00.0
0941.00.0677.01.0
101.00.0718.00.0
110.50.50.5717.5
1261.015.0515.0128.0
13107.0148.0304.0160.0
PWM
ACGT
010.442-0.5360.157-0.371
020.179-0.218-0.9540.479
03-1.024-0.9790.838-0.047
04-4.7031.379-4.703-4.703
051.377-3.907-4.703-4.703
061.378-4.703-4.703-4.228
07-4.7031.379-4.703-4.703
081.378-4.703-4.228-4.703
09-1.448-4.7031.319-4.228
10-4.228-4.7031.378-4.703
11-4.438-4.438-4.4381.377
12-1.063-2.3891.047-0.336
13-0.513-0.1920.522-0.115