We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSHOX2
(GeneCards)
ModelSHOX2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTARbhhWWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words30757
TF familyPaired-related HD factors {3.1.3}
TF subfamilySHOX {3.1.3.25}
HGNCHGNC:10854
EntrezGeneGeneID:6474
(SSTAR profile)
UniProt IDSHOX2_HUMAN
UniProt ACO60902
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.80321
0.0005 4.5923099999999994
0.0001 8.05596
GTEx tissue expression atlas SHOX2 expression
ReMap ChIP-seq dataset list SHOX2 datasets
Motifs in JASPAR
MA0720.1 (Shox2; Mus musculus)
PCM
ACGT
012132.9715266.5423534.8129494.725
02291.497577.455288.57229271.525
0330393.00811.52612.98911.526
0430429.0490.00.00.0
050.00.00.030429.049
063.6987.3126.62230411.417
0719191.3994.38711233.2630.0
0810037.1543825.88416179.971386.04
092895.6612108.3032979.36412445.722
105249.0699143.2432918.5113118.226
1112285.726922.8632074.7099145.756
1215966.3592798.207579.89211084.591
1314610.506383.30373.4215361.819
1414286.733112.93183.09815946.287
1513712.252428.236993.35515295.206
1610487.0041934.6923457.74514549.609
179580.7173619.5837879.2559349.493
PWM
ACGT
01-1.2710.696-0.7660.222
02-3.253-2.574-3.2631.347
031.385-6.291-6.192-6.291
041.386-7.989-7.989-7.989
05-7.989-7.989-7.9891.386
06-7.1-6.645-6.7181.385
070.925-6.9960.39-7.989
080.277-0.6870.754-2.975
09-0.9650.465-0.9370.492
10-0.3710.184-0.9570.545
110.479-0.094-1.2980.184
120.741-1.0-2.570.376
130.652-2.982-4.6060.703
140.63-4.188-4.4870.74
150.589-2.872-2.0340.698
160.321-1.368-0.7880.648
170.231-0.7420.0350.206