Model info
| Transcription factor | SHOX2 (GeneCards) | ||||||||
| Model | SHOX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bTAATTARbhhWWWWdd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 30757 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | SHOX {3.1.3.25} | ||||||||
| HGNC | HGNC:10854 | ||||||||
| EntrezGene | GeneID:6474 (SSTAR profile) | ||||||||
| UniProt ID | SHOX2_HUMAN | ||||||||
| UniProt AC | O60902 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SHOX2 expression | ||||||||
| ReMap ChIP-seq dataset list | SHOX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2132.97 | 15266.542 | 3534.812 | 9494.725 |
| 02 | 291.497 | 577.455 | 288.572 | 29271.525 |
| 03 | 30393.008 | 11.526 | 12.989 | 11.526 |
| 04 | 30429.049 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 30429.049 |
| 06 | 3.698 | 7.312 | 6.622 | 30411.417 |
| 07 | 19191.399 | 4.387 | 11233.263 | 0.0 |
| 08 | 10037.154 | 3825.884 | 16179.971 | 386.04 |
| 09 | 2895.66 | 12108.303 | 2979.364 | 12445.722 |
| 10 | 5249.069 | 9143.243 | 2918.51 | 13118.226 |
| 11 | 12285.72 | 6922.863 | 2074.709 | 9145.756 |
| 12 | 15966.359 | 2798.207 | 579.892 | 11084.591 |
| 13 | 14610.506 | 383.303 | 73.42 | 15361.819 |
| 14 | 14286.733 | 112.931 | 83.098 | 15946.287 |
| 15 | 13712.252 | 428.236 | 993.355 | 15295.206 |
| 16 | 10487.004 | 1934.692 | 3457.745 | 14549.609 |
| 17 | 9580.717 | 3619.583 | 7879.255 | 9349.493 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.271 | 0.696 | -0.766 | 0.222 |
| 02 | -3.253 | -2.574 | -3.263 | 1.347 |
| 03 | 1.385 | -6.291 | -6.192 | -6.291 |
| 04 | 1.386 | -7.989 | -7.989 | -7.989 |
| 05 | -7.989 | -7.989 | -7.989 | 1.386 |
| 06 | -7.1 | -6.645 | -6.718 | 1.385 |
| 07 | 0.925 | -6.996 | 0.39 | -7.989 |
| 08 | 0.277 | -0.687 | 0.754 | -2.975 |
| 09 | -0.965 | 0.465 | -0.937 | 0.492 |
| 10 | -0.371 | 0.184 | -0.957 | 0.545 |
| 11 | 0.479 | -0.094 | -1.298 | 0.184 |
| 12 | 0.741 | -1.0 | -2.57 | 0.376 |
| 13 | 0.652 | -2.982 | -4.606 | 0.703 |
| 14 | 0.63 | -4.188 | -4.487 | 0.74 |
| 15 | 0.589 | -2.872 | -2.034 | 0.698 |
| 16 | 0.321 | -1.368 | -0.788 | 0.648 |
| 17 | 0.231 | -0.742 | 0.035 | 0.206 |