We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSHOX
(GeneCards)
ModelSHOX_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length17
Quality
D
Motif rank
0
ConsensusbTAATTARbhhWWWWdd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words17808
TF familyPaired-related HD factors {3.1.3}
TF subfamilySHOX {3.1.3.25}
HGNCHGNC:10853
EntrezGeneGeneID:6473
(SSTAR profile)
UniProt IDSHOX_HUMAN
UniProt ACO15266
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.24951
0.0005 5.03386
0.0001 8.30706
GTEx tissue expression atlas SHOX expression
ReMap ChIP-seq dataset list SHOX datasets
Motifs in JASPAR
PCM
ACGT
011400.57005.52380.56993.5
02240.25385.25235.2516919.25
0317775.750.752.750.75
0417779.00.01.00.0
050.00.00.017780.0
062.00.04.017774.0
0710519.01.07259.01.0
085614.02365.09494.0307.0
091859.56191.52135.57593.5
102823.754291.751847.758816.75
117510.03408.01222.05640.0
129761.51607.5461.55949.5
138053.75325.7582.759317.75
147664.090.078.09948.0
157908.5397.5813.58660.5
166070.251308.252060.258341.25
175411.252412.253664.256292.25
PWM
ACGT
01-1.1540.455-0.6240.453
02-2.908-2.44-2.9291.336
031.386-7.238-6.752-7.238
041.386-7.505-7.163-7.505
05-7.505-7.505-7.5051.386
06-6.908-7.505-6.5371.386
070.861-7.1630.49-7.163
080.233-0.6310.759-2.665
09-0.8710.331-0.7320.535
10-0.453-0.035-0.8770.685
110.524-0.265-1.290.238
120.786-1.016-2.260.291
130.594-2.606-3.9550.74
140.545-3.873-4.0120.805
150.576-2.409-1.6960.667
160.311-1.222-0.7680.629
170.197-0.611-0.1930.347