We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSIX1
(GeneCards)
ModelSIX1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnKGWAAYhYGAbMYn
Best auROC (human)0.965
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words511
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
HGNCHGNC:10887
EntrezGeneGeneID:6495
(SSTAR profile)
UniProt IDSIX1_HUMAN
UniProt ACQ15475
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.350760000000001
0.0005 11.42891
0.0001 15.61246
GTEx tissue expression atlas SIX1 expression
ReMap ChIP-seq dataset list SIX1 datasets
Motifs in JASPAR
MA1118.1 (SIX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0134.04.043.068.025.04.06.0101.024.03.024.059.013.00.026.066.0
020.01.095.00.00.00.010.01.01.01.097.00.07.01.0285.01.0
037.00.01.00.02.00.00.01.0225.016.018.0228.01.00.01.00.0
04219.03.00.013.013.01.00.02.019.01.00.00.0203.012.01.013.0
05450.01.02.01.017.00.00.00.00.00.01.00.028.00.00.00.0
0614.0254.019.0208.00.00.00.01.00.01.00.02.00.01.00.00.0
075.04.03.02.060.0118.03.075.08.07.02.02.040.063.017.091.0
0813.010.014.076.013.028.07.0144.02.02.02.019.011.018.030.0111.0
096.00.032.01.013.01.034.010.07.00.041.05.026.03.0314.07.0
1050.01.01.00.04.00.00.00.0418.00.03.00.021.00.01.01.0
1135.071.0146.0241.01.00.00.00.01.02.00.02.00.00.00.01.0
1222.012.01.02.044.023.01.05.070.064.02.010.0125.0105.06.08.0
1322.0160.015.064.016.099.05.084.01.07.00.02.04.018.02.01.0
147.011.018.07.049.0112.019.0104.01.09.06.06.019.047.065.020.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.083-1.9750.3160.771-0.22-1.975-1.61.165-0.26-2.234-0.260.63-0.86-4.4-0.1810.741
02-4.4-3.1261.104-4.4-4.4-4.4-1.114-3.126-3.126-3.1261.124-4.4-1.454-3.1262.199-3.126
03-1.454-4.4-3.126-4.4-2.584-4.4-4.4-3.1261.963-0.658-0.5431.977-3.126-4.4-3.126-4.4
041.936-2.234-4.4-0.86-0.86-3.126-4.4-2.584-0.49-3.126-4.4-4.41.861-0.938-3.126-0.86
052.656-3.126-2.584-3.126-0.599-4.4-4.4-4.4-4.4-4.4-3.126-4.4-0.108-4.4-4.4-4.4
06-0.7882.084-0.491.885-4.4-4.4-4.4-3.126-4.4-3.126-4.4-2.584-4.4-3.126-4.4-4.4
07-1.77-1.975-2.234-2.5840.6461.32-2.2340.868-1.328-1.454-2.584-2.5840.2440.695-0.5991.061
08-0.86-1.114-0.7880.881-0.86-0.108-1.4541.518-2.584-2.584-2.584-0.49-1.022-0.543-0.041.259
09-1.6-4.40.023-3.126-0.86-3.1260.083-1.114-1.454-4.40.269-1.77-0.181-2.2342.296-1.454
100.465-3.126-3.126-4.4-1.975-4.4-4.4-4.42.582-4.4-2.234-4.4-0.392-4.4-3.126-3.126
110.1120.8141.5322.032-3.126-4.4-4.4-4.4-3.126-2.584-4.4-2.584-4.4-4.4-4.4-3.126
12-0.346-0.938-3.126-2.5840.339-0.302-3.126-1.770.80.711-2.584-1.1141.3771.203-1.6-1.328
13-0.3461.623-0.7210.711-0.6581.145-1.770.981-3.126-1.454-4.4-2.584-1.975-0.543-2.584-3.126
14-1.454-1.022-0.543-1.4540.4451.268-0.491.194-3.126-1.215-1.6-1.6-0.490.4040.726-0.439