Transcription factor | SIX1 (GeneCards) | ||||||||
Model | SIX1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nKGWAAYhYGAbMYn | ||||||||
Best auROC (human) | 0.965 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 511 | ||||||||
TF family | HD-SINE factors {3.1.6} | ||||||||
TF subfamily | SIX1-like factors {3.1.6.1} | ||||||||
HGNC | HGNC:10887 | ||||||||
EntrezGene | GeneID:6495 (SSTAR profile) | ||||||||
UniProt ID | SIX1_HUMAN | ||||||||
UniProt AC | Q15475 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SIX1 expression | ||||||||
ReMap ChIP-seq dataset list | SIX1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 34.0 | 4.0 | 43.0 | 68.0 | 25.0 | 4.0 | 6.0 | 101.0 | 24.0 | 3.0 | 24.0 | 59.0 | 13.0 | 0.0 | 26.0 | 66.0 |
02 | 0.0 | 1.0 | 95.0 | 0.0 | 0.0 | 0.0 | 10.0 | 1.0 | 1.0 | 1.0 | 97.0 | 0.0 | 7.0 | 1.0 | 285.0 | 1.0 |
03 | 7.0 | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 | 225.0 | 16.0 | 18.0 | 228.0 | 1.0 | 0.0 | 1.0 | 0.0 |
04 | 219.0 | 3.0 | 0.0 | 13.0 | 13.0 | 1.0 | 0.0 | 2.0 | 19.0 | 1.0 | 0.0 | 0.0 | 203.0 | 12.0 | 1.0 | 13.0 |
05 | 450.0 | 1.0 | 2.0 | 1.0 | 17.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 28.0 | 0.0 | 0.0 | 0.0 |
06 | 14.0 | 254.0 | 19.0 | 208.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 |
07 | 5.0 | 4.0 | 3.0 | 2.0 | 60.0 | 118.0 | 3.0 | 75.0 | 8.0 | 7.0 | 2.0 | 2.0 | 40.0 | 63.0 | 17.0 | 91.0 |
08 | 13.0 | 10.0 | 14.0 | 76.0 | 13.0 | 28.0 | 7.0 | 144.0 | 2.0 | 2.0 | 2.0 | 19.0 | 11.0 | 18.0 | 30.0 | 111.0 |
09 | 6.0 | 0.0 | 32.0 | 1.0 | 13.0 | 1.0 | 34.0 | 10.0 | 7.0 | 0.0 | 41.0 | 5.0 | 26.0 | 3.0 | 314.0 | 7.0 |
10 | 50.0 | 1.0 | 1.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 418.0 | 0.0 | 3.0 | 0.0 | 21.0 | 0.0 | 1.0 | 1.0 |
11 | 35.0 | 71.0 | 146.0 | 241.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 1.0 |
12 | 22.0 | 12.0 | 1.0 | 2.0 | 44.0 | 23.0 | 1.0 | 5.0 | 70.0 | 64.0 | 2.0 | 10.0 | 125.0 | 105.0 | 6.0 | 8.0 |
13 | 22.0 | 160.0 | 15.0 | 64.0 | 16.0 | 99.0 | 5.0 | 84.0 | 1.0 | 7.0 | 0.0 | 2.0 | 4.0 | 18.0 | 2.0 | 1.0 |
14 | 7.0 | 11.0 | 18.0 | 7.0 | 49.0 | 112.0 | 19.0 | 104.0 | 1.0 | 9.0 | 6.0 | 6.0 | 19.0 | 47.0 | 65.0 | 20.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.083 | -1.975 | 0.316 | 0.771 | -0.22 | -1.975 | -1.6 | 1.165 | -0.26 | -2.234 | -0.26 | 0.63 | -0.86 | -4.4 | -0.181 | 0.741 |
02 | -4.4 | -3.126 | 1.104 | -4.4 | -4.4 | -4.4 | -1.114 | -3.126 | -3.126 | -3.126 | 1.124 | -4.4 | -1.454 | -3.126 | 2.199 | -3.126 |
03 | -1.454 | -4.4 | -3.126 | -4.4 | -2.584 | -4.4 | -4.4 | -3.126 | 1.963 | -0.658 | -0.543 | 1.977 | -3.126 | -4.4 | -3.126 | -4.4 |
04 | 1.936 | -2.234 | -4.4 | -0.86 | -0.86 | -3.126 | -4.4 | -2.584 | -0.49 | -3.126 | -4.4 | -4.4 | 1.861 | -0.938 | -3.126 | -0.86 |
05 | 2.656 | -3.126 | -2.584 | -3.126 | -0.599 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -0.108 | -4.4 | -4.4 | -4.4 |
06 | -0.788 | 2.084 | -0.49 | 1.885 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -3.126 | -4.4 | -2.584 | -4.4 | -3.126 | -4.4 | -4.4 |
07 | -1.77 | -1.975 | -2.234 | -2.584 | 0.646 | 1.32 | -2.234 | 0.868 | -1.328 | -1.454 | -2.584 | -2.584 | 0.244 | 0.695 | -0.599 | 1.061 |
08 | -0.86 | -1.114 | -0.788 | 0.881 | -0.86 | -0.108 | -1.454 | 1.518 | -2.584 | -2.584 | -2.584 | -0.49 | -1.022 | -0.543 | -0.04 | 1.259 |
09 | -1.6 | -4.4 | 0.023 | -3.126 | -0.86 | -3.126 | 0.083 | -1.114 | -1.454 | -4.4 | 0.269 | -1.77 | -0.181 | -2.234 | 2.296 | -1.454 |
10 | 0.465 | -3.126 | -3.126 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | 2.582 | -4.4 | -2.234 | -4.4 | -0.392 | -4.4 | -3.126 | -3.126 |
11 | 0.112 | 0.814 | 1.532 | 2.032 | -3.126 | -4.4 | -4.4 | -4.4 | -3.126 | -2.584 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -3.126 |
12 | -0.346 | -0.938 | -3.126 | -2.584 | 0.339 | -0.302 | -3.126 | -1.77 | 0.8 | 0.711 | -2.584 | -1.114 | 1.377 | 1.203 | -1.6 | -1.328 |
13 | -0.346 | 1.623 | -0.721 | 0.711 | -0.658 | 1.145 | -1.77 | 0.981 | -3.126 | -1.454 | -4.4 | -2.584 | -1.975 | -0.543 | -2.584 | -3.126 |
14 | -1.454 | -1.022 | -0.543 | -1.454 | 0.445 | 1.268 | -0.49 | 1.194 | -3.126 | -1.215 | -1.6 | -1.6 | -0.49 | 0.404 | 0.726 | -0.439 |