We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSIX1
(GeneCards)
ModelSIX1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusKGWAAYhKGAbMYb
Best auROC (human)0.961
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words500
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
HGNCHGNC:10887
EntrezGeneGeneID:6495
(SSTAR profile)
UniProt IDSIX1_HUMAN
UniProt ACQ15475
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.80936
0.0005 5.826359999999999
0.0001 7.8563600000000005
GTEx tissue expression atlas SIX1 expression
ReMap ChIP-seq dataset list SIX1 datasets
Motifs in JASPAR
PCM
ACGT
0198.09.0103.0290.0
028.02.0489.01.0
03236.022.024.0218.0
04451.024.01.024.0
05496.02.01.01.0
0621.0247.024.0208.0
07109.0196.023.0172.0
0844.051.055.0350.0
0952.07.0423.018.0
10498.00.01.01.0
1138.074.0153.0235.0
12255.0211.012.022.0
1342.0294.020.0144.0
1469.0198.095.0138.0
PWM
ACGT
01-0.24-2.484-0.1910.835
02-2.584-3.5731.355-3.903
030.63-1.681-1.60.551
041.274-1.6-3.903-1.6
051.369-3.573-3.903-3.903
06-1.7250.675-1.60.504
07-0.1350.445-1.640.316
08-1.022-0.879-0.8051.022
09-0.86-2.6941.21-1.868
101.373-4.4-3.903-3.903
11-1.163-0.5160.20.626
120.7070.519-2.234-1.681
13-1.0670.848-1.770.14
14-0.5840.455-0.2710.098