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Model info
Transcription factorSIX2
(GeneCards)
ModelSIX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusndGdAAbhhRAbMYbn
Best auROC (human)0.975
Best auROC (mouse)0.96
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)9
Aligned words489
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
HGNCHGNC:10888
EntrezGeneGeneID:10736
(SSTAR profile)
UniProt IDSIX2_HUMAN
UniProt ACQ9NPC8
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.89641
0.0005 12.36626
0.0001 15.29871
GTEx tissue expression atlas SIX2 expression
ReMap ChIP-seq dataset list SIX2 datasets
Motifs in JASPAR
MA1119.1 (SIX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0134.01.045.037.040.05.07.090.026.00.033.055.011.04.049.044.0
021.06.0100.04.01.00.06.03.06.04.0120.04.05.03.0210.08.0
034.03.05.01.07.02.01.03.0190.025.045.0176.05.01.06.07.0
04171.016.06.013.024.05.01.01.045.08.01.03.0148.014.09.016.0
05374.02.06.06.041.00.01.01.013.02.01.01.027.03.02.01.0
0631.0223.041.0160.01.04.00.02.02.05.00.03.00.04.03.02.0
079.016.02.07.045.0114.05.072.011.021.02.010.035.049.016.067.0
0827.012.015.046.022.042.09.0127.08.01.04.012.020.031.027.078.0
0924.03.043.07.031.012.028.015.09.07.032.07.030.028.0187.018.0
1080.05.05.04.042.05.01.02.0279.04.04.03.040.04.03.00.0
1149.087.0158.0147.05.07.03.03.02.05.04.02.01.04.04.00.0
1228.023.02.04.063.028.00.012.076.068.03.022.057.081.07.07.0
1336.0131.021.036.019.0109.05.067.01.05.01.05.05.026.02.012.0
1410.018.028.05.049.0123.029.070.00.015.07.07.010.045.039.026.0
1513.020.027.09.085.047.014.055.016.023.046.018.017.026.030.035.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.122-3.090.3990.2050.282-1.732-1.4161.088-0.143-4.3680.0920.598-0.984-1.9380.4840.377
02-3.09-1.5621.193-1.938-3.09-4.368-1.562-2.196-1.562-1.9381.375-1.938-1.732-2.1961.933-1.289
03-1.938-2.196-1.732-3.09-1.416-2.546-3.09-2.1961.833-0.1820.3991.757-1.732-3.09-1.562-1.416
041.728-0.62-1.562-0.822-0.222-1.732-3.09-3.090.399-1.289-3.09-2.1961.584-0.75-1.177-0.62
052.509-2.546-1.562-1.5620.307-4.368-3.09-3.09-0.822-2.546-3.09-3.09-0.106-2.196-2.546-3.09
060.031.9930.3071.662-3.09-1.938-4.368-2.546-2.546-1.732-4.368-2.196-4.368-1.938-2.196-2.546
07-1.177-0.62-2.546-1.4160.3991.324-1.7320.866-0.984-0.353-2.546-1.0760.150.484-0.620.794
08-0.106-0.899-0.6830.421-0.3080.331-1.1771.431-1.289-3.09-1.938-0.899-0.4010.03-0.1060.946
09-0.222-2.1960.354-1.4160.03-0.899-0.07-0.683-1.177-1.4160.062-1.416-0.002-0.071.817-0.504
100.971-1.732-1.732-1.9380.331-1.732-3.09-2.5462.217-1.938-1.938-2.1960.282-1.938-2.196-4.368
110.4841.0541.6491.577-1.732-1.416-2.196-2.196-2.546-1.732-1.938-2.546-3.09-1.938-1.938-4.368
12-0.07-0.264-2.546-1.9380.733-0.07-4.368-0.8990.920.809-2.196-0.3080.6340.983-1.416-1.416
130.1781.462-0.3530.178-0.4511.279-1.7320.794-3.09-1.732-3.09-1.732-1.732-0.143-2.546-0.899
14-1.076-0.504-0.07-1.7320.4841.399-0.0360.838-4.368-0.683-1.416-1.416-1.0760.3990.257-0.143
15-0.822-0.401-0.106-1.1771.0310.442-0.750.598-0.62-0.2640.421-0.504-0.56-0.143-0.0020.15