We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSIX2
(GeneCards)
ModelSIX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusKGWAAYhhRAbMh
Best auROC (human)0.968
Best auROC (mouse)0.937
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)9
Aligned words500
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX1-like factors {3.1.6.1}
HGNCHGNC:10888
EntrezGeneGeneID:10736
(SSTAR profile)
UniProt IDSIX2_HUMAN
UniProt ACQ9NPC8
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.379415
0.0005 6.2441699999999996
0.0001 7.952639999999999
GTEx tissue expression atlas SIX2 expression
ReMap ChIP-seq dataset list SIX2 datasets
Motifs in JASPAR
MA1119.1 (SIX2; Homo sapiens)
PCM
ACGT
0183.06.0156.0255.0
0213.02.0476.09.0
03296.020.043.0141.0
04426.030.011.033.0
05492.05.02.01.0
0628.0250.034.0188.0
07112.0184.037.0167.0
0880.068.055.0297.0
0984.013.0369.034.0
10496.01.01.02.0
1137.080.0220.0163.0
12276.0181.014.029.0
1399.0266.033.0102.0
PWM
ACGT
01-0.403-2.8190.2190.707
02-2.163-3.5731.328-2.484
030.855-1.77-1.0440.119
041.217-1.389-2.311-1.298
051.361-2.961-3.573-3.903
06-1.4540.687-1.270.404
07-0.1080.383-1.1890.287
08-0.439-0.599-0.8050.858
09-0.392-2.1631.074-1.27
101.369-3.903-3.903-3.573
11-1.189-0.4390.560.263
120.7850.366-2.096-1.421
13-0.230.749-1.298-0.201