Transcription factor | Six2 | ||||||||
Model | SIX2_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | KGWAAYhYRAbMYb | ||||||||
Best auROC (human) | 0.963 | ||||||||
Best auROC (mouse) | 0.946 | ||||||||
Peak sets in benchmark (human) | 18 | ||||||||
Peak sets in benchmark (mouse) | 9 | ||||||||
Aligned words | 500 | ||||||||
TF family | HD-SINE factors {3.1.6} | ||||||||
TF subfamily | SIX1-like factors {3.1.6.1} | ||||||||
MGI | MGI:102778 | ||||||||
EntrezGene | GeneID:20472 (SSTAR profile) | ||||||||
UniProt ID | SIX2_MOUSE | ||||||||
UniProt AC | Q62232 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Six2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 95.0 | 5.0 | 99.0 | 301.0 |
02 | 4.0 | 1.0 | 491.0 | 4.0 |
03 | 284.0 | 35.0 | 20.0 | 161.0 |
04 | 434.0 | 38.0 | 8.0 | 20.0 |
05 | 497.0 | 2.0 | 1.0 | 0.0 |
06 | 27.0 | 240.0 | 31.0 | 202.0 |
07 | 123.0 | 201.0 | 42.0 | 134.0 |
08 | 61.0 | 87.0 | 51.0 | 301.0 |
09 | 110.0 | 17.0 | 348.0 | 25.0 |
10 | 497.0 | 2.0 | 1.0 | 0.0 |
11 | 43.0 | 78.0 | 186.0 | 193.0 |
12 | 233.0 | 217.0 | 16.0 | 34.0 |
13 | 70.0 | 295.0 | 30.0 | 105.0 |
14 | 59.0 | 192.0 | 101.0 | 148.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.271 | -2.961 | -0.23 | 0.872 |
02 | -3.126 | -3.903 | 1.359 | -3.126 |
03 | 0.814 | -1.242 | -1.77 | 0.25 |
04 | 1.236 | -1.163 | -2.584 | -1.77 |
05 | 1.371 | -3.573 | -3.903 | -4.4 |
06 | -1.489 | 0.646 | -1.358 | 0.475 |
07 | -0.016 | 0.47 | -1.067 | 0.069 |
08 | -0.705 | -0.357 | -0.879 | 0.872 |
09 | -0.126 | -1.92 | 1.016 | -1.561 |
10 | 1.371 | -3.573 | -3.903 | -4.4 |
11 | -1.044 | -0.464 | 0.393 | 0.43 |
12 | 0.617 | 0.546 | -1.975 | -1.27 |
13 | -0.57 | 0.852 | -1.389 | -0.172 |
14 | -0.737 | 0.425 | -0.21 | 0.167 |