We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSix4
ModelSIX4_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusndGdMAbhbRAbhbn
Best auROC (human)
Best auROC (mouse)0.916
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words428
TF familyHD-SINE factors {3.1.6}
TF subfamilySIX4-like factors {3.1.6.3}
MGIMGI:106034
EntrezGeneGeneID:20474
(SSTAR profile)
UniProt IDSIX4_MOUSE
UniProt ACQ61321
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.709510000000002
0.0005 12.14086
0.0001 15.021910000000002
GTEx tissue expression atlas Six4 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0138.07.013.044.029.07.010.095.020.03.018.051.016.03.026.043.0
020.03.095.05.02.01.017.00.00.03.063.01.06.09.0217.01.0
032.01.04.01.011.02.00.03.0185.029.054.0124.02.00.02.03.0
04149.037.06.08.019.08.01.04.049.05.03.03.097.023.04.07.0
05295.011.04.04.069.03.00.01.013.00.01.00.016.04.00.02.0
0630.0192.043.0128.02.011.01.04.00.04.00.01.02.01.00.04.0
076.017.09.02.041.093.019.055.011.022.06.05.029.055.020.033.0
0811.06.028.042.032.041.012.0102.02.015.011.026.013.015.021.046.0
0911.08.038.01.019.016.038.04.09.04.055.04.015.011.0186.04.0
1046.04.04.00.035.03.01.00.0293.016.05.03.08.03.01.01.0
1150.0138.0119.075.03.017.04.02.02.08.00.01.00.00.04.00.0
1225.06.019.05.077.043.010.033.064.033.019.011.021.036.010.011.0
1324.097.039.027.012.058.01.047.06.038.010.04.05.049.03.03.0
1410.012.018.07.046.090.036.070.06.015.021.011.07.019.036.019.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.359-1.29-0.6950.5040.091-1.29-0.9491.269-0.275-2.072-0.3780.65-0.493-2.072-0.0160.481
02-4.262-2.0721.269-1.607-2.423-2.968-0.434-4.262-4.262-2.0720.86-2.968-1.436-1.0512.093-2.968
03-2.423-2.968-1.812-2.968-0.857-2.423-4.262-2.0721.9330.0910.7071.534-2.423-4.262-2.423-2.072
041.7180.332-1.436-1.163-0.325-1.163-2.968-1.8120.611-1.607-2.072-2.0721.29-0.137-1.812-1.29
052.399-0.857-1.812-1.8120.951-2.072-4.262-2.968-0.695-4.262-2.968-4.262-0.493-1.812-4.262-2.423
060.1251.970.4811.566-2.423-0.857-2.968-1.812-4.262-1.812-4.262-2.968-2.423-2.968-4.262-1.812
07-1.436-0.434-1.051-2.4230.4341.248-0.3250.725-0.857-0.181-1.436-1.6070.0910.725-0.2750.219
08-0.857-1.4360.0570.4580.1880.434-0.7731.34-2.423-0.556-0.857-0.016-0.695-0.556-0.2270.548
09-0.857-1.1630.359-2.968-0.325-0.4930.359-1.812-1.051-1.8120.725-1.812-0.556-0.8571.939-1.812
100.548-1.812-1.812-4.2620.277-2.072-2.968-4.2622.392-0.493-1.607-2.072-1.163-2.072-2.968-2.968
110.6311.6411.4931.034-2.072-0.434-1.812-2.423-2.423-1.163-4.262-2.968-4.262-4.262-1.812-4.262
12-0.055-1.436-0.325-1.6071.060.481-0.9490.2190.8760.219-0.325-0.857-0.2270.305-0.949-0.857
13-0.0951.290.3840.021-0.7730.778-2.9680.569-1.4360.359-0.949-1.812-1.6070.611-2.072-2.072
14-0.949-0.773-0.378-1.290.5481.2150.3050.965-1.436-0.556-0.227-0.857-1.29-0.3250.305-0.325