We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMAD1
(GeneCards)
ModelSMAD1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
D
Motif rank
0
ConsensusdGCCTSTCTGYM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words12
TF familySMAD factors {7.1.1}
TF subfamilyRegulatory Smads (R-Smad) {7.1.1.1}
HGNCHGNC:6767
EntrezGeneGeneID:4086
(SSTAR profile)
UniProt IDSMAD1_HUMAN
UniProt ACQ15797
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.965335
0.0005 5.641365
0.0001 7.085190000000001
GTEx tissue expression atlas SMAD1 expression
ReMap ChIP-seq dataset list SMAD1 datasets
Motifs in JASPAR
PCM
ACGT
015.2420.2733.972.455
020.05.7586.1820.0
030.978.7880.02.182
041.9398.9091.0910.0
050.970.970.010.0
060.973.1527.2730.545
070.00.5450.011.394
080.09.7582.1820.0
091.0910.00.010.848
100.00.010.8481.091
111.0917.6970.972.182
123.1526.6060.02.182
PWM
ACGT
010.486-1.3960.242-0.159
02-1.760.5710.635-1.76
03-0.8190.959-1.76-0.252
04-0.3430.972-0.745-1.76
05-0.819-0.819-1.761.08
06-0.8190.0450.784-1.129
07-1.76-1.129-1.761.204
08-1.761.057-0.252-1.76
09-0.745-1.76-1.761.157
10-1.76-1.761.157-0.745
11-0.7450.836-0.819-0.252
120.0450.695-1.76-0.252