Transcription factor | SMAD1 (GeneCards) | ||||||||
Model | SMAD1_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 12 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | dGCCTSTCTGYM | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 12 | ||||||||
TF family | SMAD factors {7.1.1} | ||||||||
TF subfamily | Regulatory Smads (R-Smad) {7.1.1.1} | ||||||||
HGNC | HGNC:6767 | ||||||||
EntrezGene | GeneID:4086 (SSTAR profile) | ||||||||
UniProt ID | SMAD1_HUMAN | ||||||||
UniProt AC | Q15797 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SMAD1 expression | ||||||||
ReMap ChIP-seq dataset list | SMAD1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 5.242 | 0.273 | 3.97 | 2.455 |
02 | 0.0 | 5.758 | 6.182 | 0.0 |
03 | 0.97 | 8.788 | 0.0 | 2.182 |
04 | 1.939 | 8.909 | 1.091 | 0.0 |
05 | 0.97 | 0.97 | 0.0 | 10.0 |
06 | 0.97 | 3.152 | 7.273 | 0.545 |
07 | 0.0 | 0.545 | 0.0 | 11.394 |
08 | 0.0 | 9.758 | 2.182 | 0.0 |
09 | 1.091 | 0.0 | 0.0 | 10.848 |
10 | 0.0 | 0.0 | 10.848 | 1.091 |
11 | 1.091 | 7.697 | 0.97 | 2.182 |
12 | 3.152 | 6.606 | 0.0 | 2.182 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.486 | -1.396 | 0.242 | -0.159 |
02 | -1.76 | 0.571 | 0.635 | -1.76 |
03 | -0.819 | 0.959 | -1.76 | -0.252 |
04 | -0.343 | 0.972 | -0.745 | -1.76 |
05 | -0.819 | -0.819 | -1.76 | 1.08 |
06 | -0.819 | 0.045 | 0.784 | -1.129 |
07 | -1.76 | -1.129 | -1.76 | 1.204 |
08 | -1.76 | 1.057 | -0.252 | -1.76 |
09 | -0.745 | -1.76 | -1.76 | 1.157 |
10 | -1.76 | -1.76 | 1.157 | -0.745 |
11 | -0.745 | 0.836 | -0.819 | -0.252 |
12 | 0.045 | 0.695 | -1.76 | -0.252 |