We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMAD2
(GeneCards)
ModelSMAD2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnvWGKCTSnYhCYhn
Best auROC (human)0.864
Best auROC (mouse)0.844
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words504
TF familySMAD factors {7.1.1}
TF subfamilyRegulatory Smads (R-Smad) {7.1.1.1}
HGNCHGNC:6768
EntrezGeneGeneID:4087
(SSTAR profile)
UniProt IDSMAD2_HUMAN
UniProt ACQ15796
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.29536
0.0005 10.995560000000001
0.0001 14.476560000000001
GTEx tissue expression atlas SMAD2 expression
ReMap ChIP-seq dataset list SMAD2 datasets
Motifs in JASPAR
MA0513.1 (SMAD2::SMAD3::SMAD4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0124.042.031.012.030.084.010.022.015.063.030.016.019.056.018.028.0
0221.010.05.052.057.017.07.0164.012.026.09.042.012.06.05.055.0
034.05.090.03.00.01.055.03.03.05.017.01.011.09.0284.09.0
040.00.01.017.01.00.00.019.018.026.054.0348.00.00.01.015.0
051.017.00.01.00.026.00.00.00.055.01.00.02.0386.08.03.0
060.00.00.03.02.04.00.0478.02.00.00.07.00.00.01.03.0
071.00.02.01.00.01.02.01.00.00.01.00.074.0114.0286.017.0
086.011.036.022.050.019.04.042.050.062.0111.068.00.01.08.010.0
097.080.09.010.09.071.03.010.010.0126.014.09.05.0119.08.010.0
107.06.010.08.0242.040.037.077.02.017.04.011.011.05.012.011.0
1112.0213.026.011.03.055.02.08.01.055.06.01.04.086.07.010.0
122.010.03.05.058.0256.08.087.03.029.07.02.02.019.02.07.0
1310.09.011.035.048.094.011.0161.05.04.03.08.05.033.020.043.0
1412.028.014.014.049.042.012.037.014.014.010.07.026.052.0101.068.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.260.293-0.008-0.938-0.040.981-1.114-0.346-0.7210.695-0.04-0.658-0.490.578-0.543-0.108
02-0.392-1.114-1.770.5040.595-0.599-1.4541.648-0.938-0.181-1.2150.293-0.938-1.6-1.770.56
03-1.975-1.771.05-2.234-4.4-3.1260.56-2.234-2.234-1.77-0.599-3.126-1.022-1.2152.196-1.215
04-4.4-4.4-3.126-0.599-3.126-4.4-4.4-0.49-0.543-0.1810.5422.399-4.4-4.4-3.126-0.721
05-3.126-0.599-4.4-3.126-4.4-0.181-4.4-4.4-4.40.56-3.126-4.4-2.5842.502-1.328-2.234
06-4.4-4.4-4.4-2.234-2.584-1.975-4.42.716-2.584-4.4-4.4-1.454-4.4-4.4-3.126-2.234
07-3.126-4.4-2.584-3.126-4.4-3.126-2.584-3.126-4.4-4.4-3.126-4.40.8551.2852.203-0.599
08-1.6-1.0220.14-0.3460.465-0.49-1.9750.2930.4650.6791.2590.771-4.4-3.126-1.328-1.114
09-1.4540.932-1.215-1.114-1.2150.814-2.234-1.114-1.1141.385-0.788-1.215-1.771.328-1.328-1.114
10-1.454-1.6-1.114-1.3282.0360.2440.1670.894-2.584-0.599-1.975-1.022-1.022-1.77-0.938-1.022
11-0.9381.909-0.181-1.022-2.2340.56-2.584-1.328-3.1260.56-1.6-3.126-1.9751.004-1.454-1.114
12-2.584-1.114-2.234-1.770.6132.092-1.3281.016-2.234-0.074-1.454-2.584-2.584-0.49-2.584-1.454
13-1.114-1.215-1.0220.1120.4251.093-1.0221.629-1.77-1.975-2.234-1.328-1.770.054-0.4390.316
14-0.938-0.108-0.788-0.7880.4450.293-0.9380.167-0.788-0.788-1.114-1.454-0.1810.5041.1650.771