We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMAD2
(GeneCards)
ModelSMAD2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusWGKCTSnChCYb
Best auROC (human)0.848
Best auROC (mouse)0.808
Peak sets in benchmark (human)17
Peak sets in benchmark (mouse)26
Aligned words500
TF familySMAD factors {7.1.1}
TF subfamilyRegulatory Smads (R-Smad) {7.1.1.1}
HGNCHGNC:6768
EntrezGeneGeneID:4087
(SSTAR profile)
UniProt IDSMAD2_HUMAN
UniProt ACQ15796
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.88386
0.0005 5.715225
0.0001 7.420475
GTEx tissue expression atlas SMAD2 expression
ReMap ChIP-seq dataset list SMAD2 datasets
Motifs in JASPAR
MA0513.1 (SMAD2::SMAD3::SMAD4; Homo sapiens)
PCM
ACGT
01107.037.024.0332.0
0222.037.0427.014.0
0326.060.073.0341.0
042.0483.04.011.0
0510.010.00.0480.0
0661.0108.0302.029.0
0781.0134.0125.0160.0
0816.0450.014.020.0
09268.059.027.0146.0
1024.0402.055.019.0
1180.0302.04.0114.0
1246.0131.054.0269.0
PWM
ACGT
01-0.153-1.189-1.60.969
02-1.681-1.1891.22-2.096
03-1.525-0.721-0.5290.996
04-3.5731.343-3.126-2.311
05-2.394-2.394-4.41.336
06-0.705-0.1440.875-1.421
07-0.4270.0690.00.244
08-1.9751.272-2.096-1.77
090.756-0.737-1.4890.154
10-1.61.16-0.805-1.818
11-0.4390.875-3.126-0.091
12-0.9790.046-0.8230.76