Model info
| Transcription factor | Smad2 | ||||||||
| Model | SMAD2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvTGYCTGb | ||||||||
| Best auROC (human) | 0.803 | ||||||||
| Best auROC (mouse) | 0.885 | ||||||||
| Peak sets in benchmark (human) | 17 | ||||||||
| Peak sets in benchmark (mouse) | 26 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SMAD factors {7.1.1} | ||||||||
| TF subfamily | Regulatory Smads (R-Smad) {7.1.1.1} | ||||||||
| MGI | MGI:108051 | ||||||||
| EntrezGene | GeneID:17126 (SSTAR profile) | ||||||||
| UniProt ID | SMAD2_MOUSE | ||||||||
| UniProt AC | Q62432 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Smad2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 84.0 | 77.0 | 100.0 | 239.0 |
| 02 | 56.0 | 291.0 | 106.0 | 47.0 |
| 03 | 9.0 | 6.0 | 0.0 | 485.0 |
| 04 | 5.0 | 12.0 | 457.0 | 26.0 |
| 05 | 7.0 | 196.0 | 41.0 | 256.0 |
| 06 | 14.0 | 444.0 | 9.0 | 33.0 |
| 07 | 34.0 | 1.0 | 4.0 | 461.0 |
| 08 | 15.0 | 29.0 | 448.0 | 8.0 |
| 09 | 48.0 | 160.0 | 188.0 | 104.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.392 | -0.477 | -0.22 | 0.642 |
| 02 | -0.788 | 0.838 | -0.163 | -0.958 |
| 03 | -2.484 | -2.819 | -4.4 | 1.347 |
| 04 | -2.961 | -2.234 | 1.287 | -1.525 |
| 05 | -2.694 | 0.445 | -1.09 | 0.711 |
| 06 | -2.096 | 1.259 | -2.484 | -1.298 |
| 07 | -1.27 | -3.903 | -3.126 | 1.296 |
| 08 | -2.034 | -1.421 | 1.268 | -2.584 |
| 09 | -0.938 | 0.244 | 0.404 | -0.181 |