Transcription factor | SMAD3 (GeneCards) | ||||||||
Model | SMAD3_HUMAN.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhvbYTvbCWSMhn | ||||||||
Best auROC (human) | 0.799 | ||||||||
Best auROC (mouse) | 0.682 | ||||||||
Peak sets in benchmark (human) | 34 | ||||||||
Peak sets in benchmark (mouse) | 30 | ||||||||
Aligned words | 506 | ||||||||
TF family | SMAD factors {7.1.1} | ||||||||
TF subfamily | Regulatory Smads (R-Smad) {7.1.1.1} | ||||||||
HGNC | HGNC:6769 | ||||||||
EntrezGene | GeneID:4088 (SSTAR profile) | ||||||||
UniProt ID | SMAD3_HUMAN | ||||||||
UniProt AC | P84022 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SMAD3 expression | ||||||||
ReMap ChIP-seq dataset list | SMAD3 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 25.0 | 21.0 | 9.0 | 39.0 | 38.0 | 28.0 | 10.0 | 74.0 | 2.0 | 29.0 | 29.0 | 53.0 | 14.0 | 29.0 | 26.0 | 73.0 |
02 | 7.0 | 11.0 | 57.0 | 4.0 | 28.0 | 42.0 | 30.0 | 7.0 | 12.0 | 26.0 | 21.0 | 15.0 | 48.0 | 45.0 | 138.0 | 8.0 |
03 | 7.0 | 16.0 | 10.0 | 62.0 | 16.0 | 42.0 | 10.0 | 56.0 | 15.0 | 44.0 | 48.0 | 139.0 | 4.0 | 3.0 | 12.0 | 15.0 |
04 | 5.0 | 20.0 | 2.0 | 15.0 | 11.0 | 62.0 | 1.0 | 31.0 | 6.0 | 67.0 | 2.0 | 5.0 | 5.0 | 218.0 | 9.0 | 40.0 |
05 | 6.0 | 1.0 | 0.0 | 20.0 | 24.0 | 4.0 | 5.0 | 334.0 | 3.0 | 1.0 | 2.0 | 8.0 | 10.0 | 4.0 | 4.0 | 73.0 |
06 | 5.0 | 8.0 | 22.0 | 8.0 | 2.0 | 3.0 | 3.0 | 2.0 | 2.0 | 3.0 | 4.0 | 2.0 | 69.0 | 106.0 | 236.0 | 24.0 |
07 | 4.0 | 14.0 | 25.0 | 35.0 | 22.0 | 25.0 | 14.0 | 59.0 | 37.0 | 56.0 | 82.0 | 90.0 | 3.0 | 13.0 | 6.0 | 14.0 |
08 | 0.0 | 60.0 | 5.0 | 1.0 | 3.0 | 100.0 | 0.0 | 5.0 | 8.0 | 110.0 | 7.0 | 2.0 | 6.0 | 173.0 | 14.0 | 5.0 |
09 | 8.0 | 7.0 | 1.0 | 1.0 | 270.0 | 55.0 | 14.0 | 104.0 | 15.0 | 7.0 | 1.0 | 3.0 | 4.0 | 8.0 | 0.0 | 1.0 |
10 | 7.0 | 217.0 | 61.0 | 12.0 | 1.0 | 69.0 | 2.0 | 5.0 | 0.0 | 13.0 | 2.0 | 1.0 | 1.0 | 78.0 | 25.0 | 5.0 |
11 | 0.0 | 7.0 | 1.0 | 1.0 | 66.0 | 271.0 | 6.0 | 34.0 | 8.0 | 68.0 | 6.0 | 8.0 | 2.0 | 15.0 | 6.0 | 0.0 |
12 | 20.0 | 12.0 | 19.0 | 25.0 | 100.0 | 47.0 | 8.0 | 206.0 | 8.0 | 1.0 | 1.0 | 9.0 | 4.0 | 9.0 | 4.0 | 26.0 |
13 | 26.0 | 42.0 | 38.0 | 26.0 | 19.0 | 19.0 | 7.0 | 24.0 | 6.0 | 13.0 | 8.0 | 5.0 | 31.0 | 69.0 | 124.0 | 42.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.218 | -0.39 | -1.213 | 0.221 | 0.195 | -0.106 | -1.112 | 0.857 | -2.582 | -0.072 | -0.072 | 0.525 | -0.786 | -0.072 | -0.179 | 0.843 |
02 | -1.452 | -1.02 | 0.597 | -1.973 | -0.106 | 0.294 | -0.038 | -1.452 | -0.936 | -0.179 | -0.39 | -0.719 | 0.427 | 0.363 | 1.478 | -1.326 |
03 | -1.452 | -0.656 | -1.112 | 0.681 | -0.656 | 0.294 | -1.112 | 0.58 | -0.719 | 0.341 | 0.427 | 1.485 | -1.973 | -2.232 | -0.936 | -0.719 |
04 | -1.768 | -0.437 | -2.582 | -0.719 | -1.02 | 0.681 | -3.124 | -0.006 | -1.598 | 0.758 | -2.582 | -1.768 | -1.768 | 1.934 | -1.213 | 0.246 |
05 | -1.598 | -3.124 | -4.398 | -0.437 | -0.258 | -1.973 | -1.768 | 2.36 | -2.232 | -3.124 | -2.582 | -1.326 | -1.112 | -1.973 | -1.973 | 0.843 |
06 | -1.768 | -1.326 | -0.344 | -1.326 | -2.582 | -2.232 | -2.232 | -2.582 | -2.582 | -2.232 | -1.973 | -2.582 | 0.787 | 1.215 | 2.013 | -0.258 |
07 | -1.973 | -0.786 | -0.218 | 0.114 | -0.344 | -0.218 | -0.786 | 0.632 | 0.169 | 0.58 | 0.959 | 1.052 | -2.232 | -0.858 | -1.598 | -0.786 |
08 | -4.398 | 0.648 | -1.768 | -3.124 | -2.232 | 1.157 | -4.398 | -1.768 | -1.326 | 1.252 | -1.452 | -2.582 | -1.598 | 1.703 | -0.786 | -1.768 |
09 | -1.326 | -1.452 | -3.124 | -3.124 | 2.147 | 0.562 | -0.786 | 1.196 | -0.719 | -1.452 | -3.124 | -2.232 | -1.973 | -1.326 | -4.398 | -3.124 |
10 | -1.452 | 1.929 | 0.665 | -0.936 | -3.124 | 0.787 | -2.582 | -1.768 | -4.398 | -0.858 | -2.582 | -3.124 | -3.124 | 0.909 | -0.218 | -1.768 |
11 | -4.398 | -1.452 | -3.124 | -3.124 | 0.743 | 2.151 | -1.598 | 0.085 | -1.326 | 0.773 | -1.598 | -1.326 | -2.582 | -0.719 | -1.598 | -4.398 |
12 | -0.437 | -0.936 | -0.488 | -0.218 | 1.157 | 0.406 | -1.326 | 1.877 | -1.326 | -3.124 | -3.124 | -1.213 | -1.973 | -1.213 | -1.973 | -0.179 |
13 | -0.179 | 0.294 | 0.195 | -0.179 | -0.488 | -0.488 | -1.452 | -0.258 | -1.598 | -0.858 | -1.326 | -1.768 | -0.006 | 0.787 | 1.371 | 0.294 |