Transcription factor | Smad3 | ||||||||
Model | SMAD3_MOUSE.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | vbYTShCWSCWb | ||||||||
Best auROC (human) | 0.806 | ||||||||
Best auROC (mouse) | 0.707 | ||||||||
Peak sets in benchmark (human) | 34 | ||||||||
Peak sets in benchmark (mouse) | 30 | ||||||||
Aligned words | 500 | ||||||||
TF family | SMAD factors {7.1.1} | ||||||||
TF subfamily | Regulatory Smads (R-Smad) {7.1.1.1} | ||||||||
MGI | MGI:1201674 | ||||||||
EntrezGene | GeneID:17127 (SSTAR profile) | ||||||||
UniProt ID | SMAD3_MOUSE | ||||||||
UniProt AC | Q8BUN5 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Smad3 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 82.0 | 182.0 | 157.0 | 79.0 |
02 | 55.0 | 136.0 | 84.0 | 225.0 |
03 | 32.0 | 348.0 | 30.0 | 90.0 |
04 | 108.0 | 2.0 | 7.0 | 383.0 |
05 | 35.0 | 147.0 | 277.0 | 41.0 |
06 | 106.0 | 156.0 | 53.0 | 185.0 |
07 | 19.0 | 435.0 | 4.0 | 42.0 |
08 | 233.0 | 59.0 | 11.0 | 197.0 |
09 | 4.0 | 283.0 | 166.0 | 47.0 |
10 | 16.0 | 456.0 | 7.0 | 21.0 |
11 | 176.0 | 28.0 | 2.0 | 294.0 |
12 | 36.0 | 136.0 | 247.0 | 81.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.415 | 0.372 | 0.225 | -0.452 |
02 | -0.805 | 0.083 | -0.392 | 0.582 |
03 | -1.328 | 1.016 | -1.389 | -0.324 |
04 | -0.144 | -3.573 | -2.694 | 1.111 |
05 | -1.242 | 0.16 | 0.789 | -1.09 |
06 | -0.163 | 0.219 | -0.841 | 0.388 |
07 | -1.818 | 1.238 | -3.126 | -1.067 |
08 | 0.617 | -0.737 | -2.311 | 0.45 |
09 | -3.126 | 0.81 | 0.281 | -0.958 |
10 | -1.975 | 1.285 | -2.694 | -1.725 |
11 | 0.339 | -1.454 | -3.573 | 0.848 |
12 | -1.215 | 0.083 | 0.675 | -0.427 |