We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMAD4
(GeneCards)
ModelSMAD4_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusvWGKCTSdCWSYh
Best auROC (human)0.869
Best auROC (mouse)0.671
Peak sets in benchmark (human)24
Peak sets in benchmark (mouse)3
Aligned words497
TF familySMAD factors {7.1.1}
TF subfamilyCo-activating Smads (Co-Smad) {7.1.1.2}
HGNCHGNC:6770
EntrezGeneGeneID:4089
(SSTAR profile)
UniProt IDSMAD4_HUMAN
UniProt ACQ13485
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.49136
0.0005 5.418810000000001
0.0001 7.315275
GTEx tissue expression atlas SMAD4 expression
ReMap ChIP-seq dataset list SMAD4 datasets
Motifs in JASPAR
PCM
ACGT
01109.0223.0101.064.0
02153.050.026.0268.0
039.05.0470.013.0
0423.023.088.0363.0
051.0488.04.04.0
061.03.01.0492.0
0772.0105.0297.023.0
0896.073.0184.0144.0
0914.0467.08.08.0
10354.026.046.071.0
1126.0346.094.031.0
1267.0285.032.0113.0
1368.0104.047.0278.0
PWM
ACGT
01-0.1290.579-0.204-0.652
020.206-0.892-1.5190.762
03-2.478-2.9551.321-2.157
04-1.634-1.634-0.341.064
05-3.8981.359-3.121-3.121
06-3.898-3.319-3.8981.367
07-0.537-0.1660.864-1.634
08-0.254-0.5230.3890.146
09-2.0911.315-2.578-2.578
101.039-1.519-0.973-0.55
11-1.5191.016-0.275-1.352
12-0.6070.823-1.322-0.094
13-0.593-0.176-0.9520.798