Model info
| Transcription factor | Smad4 | ||||||||
| Model | SMAD4_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vWGbCTvnChSh | ||||||||
| Best auROC (human) | 0.835 | ||||||||
| Best auROC (mouse) | 0.873 | ||||||||
| Peak sets in benchmark (human) | 24 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 489 | ||||||||
| TF family | SMAD factors {7.1.1} | ||||||||
| TF subfamily | Co-activating Smads (Co-Smad) {7.1.1.2} | ||||||||
| MGI | MGI:894293 | ||||||||
| EntrezGene | GeneID:17128 (SSTAR profile) | ||||||||
| UniProt ID | SMAD4_MOUSE | ||||||||
| UniProt AC | P97471 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Smad4 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 98.0 | 217.0 | 94.0 | 80.0 |
| 02 | 111.0 | 40.0 | 37.0 | 301.0 |
| 03 | 14.0 | 34.0 | 418.0 | 23.0 |
| 04 | 37.0 | 83.0 | 98.0 | 271.0 |
| 05 | 4.0 | 429.0 | 9.0 | 47.0 |
| 06 | 0.0 | 8.0 | 3.0 | 478.0 |
| 07 | 76.0 | 96.0 | 276.0 | 41.0 |
| 08 | 94.0 | 99.0 | 159.0 | 137.0 |
| 09 | 53.0 | 391.0 | 34.0 | 11.0 |
| 10 | 270.0 | 69.0 | 37.0 | 113.0 |
| 11 | 28.0 | 340.0 | 74.0 | 47.0 |
| 12 | 90.0 | 237.0 | 39.0 | 123.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.218 | 0.568 | -0.259 | -0.417 |
| 02 | -0.095 | -1.092 | -1.167 | 0.894 |
| 03 | -2.075 | -1.248 | 1.221 | -1.618 |
| 04 | -1.167 | -0.381 | -0.218 | 0.789 |
| 05 | -3.105 | 1.246 | -2.463 | -0.936 |
| 06 | -4.382 | -2.562 | -3.304 | 1.354 |
| 07 | -0.468 | -0.238 | 0.807 | -1.068 |
| 08 | -0.259 | -0.208 | 0.26 | 0.113 |
| 09 | -0.82 | 1.154 | -1.248 | -2.289 |
| 10 | 0.785 | -0.562 | -1.167 | -0.078 |
| 11 | -1.433 | 1.015 | -0.494 | -0.936 |
| 12 | -0.302 | 0.656 | -1.116 | 0.006 |