Transcription factor | SMARCA1 (GeneCards) | ||||||||
Model | SMCA1_HUMAN.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | vMWRGAAKMAWn | ||||||||
Best auROC (human) | 0.912 | ||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | 3 | ||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 442 | ||||||||
TF family | Myb/SANT domain factors {3.5.1} | ||||||||
TF subfamily | SMARCA-like factors {3.5.1.5} | ||||||||
HGNC | HGNC:11097 | ||||||||
EntrezGene | GeneID:6594 (SSTAR profile) | ||||||||
UniProt ID | SMCA1_HUMAN | ||||||||
UniProt AC | P28370 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SMARCA1 expression | ||||||||
ReMap ChIP-seq dataset list | SMARCA1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 105.0 | 218.0 | 79.0 | 39.0 |
02 | 198.0 | 221.0 | 7.0 | 15.0 |
03 | 263.0 | 56.0 | 40.0 | 82.0 |
04 | 237.0 | 0.0 | 193.0 | 11.0 |
05 | 20.0 | 11.0 | 405.0 | 5.0 |
06 | 406.0 | 12.0 | 18.0 | 5.0 |
07 | 421.0 | 4.0 | 8.0 | 8.0 |
08 | 40.0 | 18.0 | 318.0 | 65.0 |
09 | 269.0 | 152.0 | 11.0 | 9.0 |
10 | 378.0 | 19.0 | 25.0 | 19.0 |
11 | 114.0 | 24.0 | 25.0 | 278.0 |
12 | 99.0 | 77.0 | 168.0 | 97.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.048 | 0.675 | -0.328 | -1.015 |
02 | 0.579 | 0.689 | -2.574 | -1.912 |
03 | 0.861 | -0.664 | -0.99 | -0.291 |
04 | 0.758 | -4.296 | 0.554 | -2.189 |
05 | -1.647 | -2.189 | 1.291 | -2.841 |
06 | 1.294 | -2.112 | -1.745 | -2.841 |
07 | 1.33 | -3.008 | -2.463 | -2.463 |
08 | -0.99 | -1.745 | 1.05 | -0.519 |
09 | 0.884 | 0.317 | -2.189 | -2.363 |
10 | 1.222 | -1.695 | -1.438 | -1.695 |
11 | 0.033 | -1.477 | -1.438 | 0.917 |
12 | -0.106 | -0.353 | 0.417 | -0.126 |