We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMARCA5
(GeneCards)
ModelSMCA5_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
C
Motif rank
0
ConsensusdRMMAShRbSWKbCWSWd
Best auROC (human)0.668
Best auROC (mouse)0.729
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words274
TF familyMyb/SANT domain factors {3.5.1}
TF subfamilySMARCA-like factors {3.5.1.5}
HGNCHGNC:11101
EntrezGeneGeneID:8467
(SSTAR profile)
UniProt IDSMCA5_HUMAN
UniProt ACO60264
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.590209999999999
0.0005 11.266660000000002
0.0001 14.79071
GTEx tissue expression atlas SMARCA5 expression
ReMap ChIP-seq dataset list SMARCA5 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
018.03.095.014.08.07.013.012.014.06.022.03.011.09.030.09.0
0222.012.04.03.016.02.05.02.0108.029.011.012.023.06.08.01.0
0323.0128.03.015.05.037.02.05.06.019.02.01.04.013.00.01.0
0438.00.00.00.0190.00.05.02.05.00.02.00.019.00.03.00.0
0515.029.0194.014.00.00.00.00.01.02.06.01.00.00.02.00.0
0613.01.01.01.012.08.01.010.0110.023.027.042.02.09.03.01.0
0798.015.021.03.029.07.03.02.017.02.013.00.028.04.022.00.0
086.032.0100.034.014.011.01.02.06.034.011.08.01.01.02.01.0
092.013.03.09.07.060.05.06.014.076.018.06.00.033.010.02.0
1022.01.00.00.0130.014.03.035.016.07.00.013.012.03.02.06.0
117.013.033.0127.04.06.00.015.00.02.01.02.07.018.013.016.0
124.03.05.06.011.017.01.010.015.08.014.010.08.015.043.094.0
132.031.04.01.05.033.04.01.03.052.07.01.04.0108.06.02.0
141.04.00.09.034.021.02.0167.03.012.03.03.01.00.01.03.0
152.023.014.00.03.031.03.00.02.01.03.00.06.0113.058.05.0
166.02.01.04.0121.025.01.021.033.07.04.034.02.01.00.02.0
1722.025.0102.013.010.012.04.09.00.03.02.01.014.01.015.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.702-1.6161.733-0.161-0.702-0.83-0.233-0.311-0.161-0.9760.282-1.616-0.395-0.5890.588-0.589
020.282-0.311-1.354-1.616-0.03-1.97-1.147-1.971.8610.555-0.395-0.3110.326-0.976-0.702-2.525
030.3262.03-1.616-0.093-1.1470.796-1.97-1.147-0.9760.138-1.97-2.525-1.354-0.233-3.878-2.525
040.822-3.878-3.878-3.8782.425-3.878-1.147-1.97-1.147-3.878-1.97-3.8780.138-3.878-1.616-3.878
05-0.0930.5552.445-0.161-3.878-3.878-3.878-3.878-2.525-1.97-0.976-2.525-3.878-3.878-1.97-3.878
06-0.233-2.525-2.525-2.525-0.311-0.702-2.525-0.4871.8790.3260.4840.922-1.97-0.589-1.616-2.525
071.764-0.0930.237-1.6160.555-0.83-1.616-1.970.029-1.97-0.233-3.8780.52-1.3540.282-3.878
08-0.9760.6521.7840.712-0.161-0.395-2.525-1.97-0.9760.712-0.395-0.702-2.525-2.525-1.97-2.525
09-1.97-0.233-1.616-0.589-0.831.276-1.147-0.976-0.1611.5110.085-0.976-3.8780.683-0.487-1.97
100.282-2.525-3.878-3.8782.046-0.161-1.6160.741-0.03-0.83-3.878-0.233-0.311-1.616-1.97-0.976
11-0.83-0.2330.6832.023-1.354-0.976-3.878-0.093-3.878-1.97-2.525-1.97-0.830.085-0.233-0.03
12-1.354-1.616-1.147-0.976-0.3950.029-2.525-0.487-0.093-0.702-0.161-0.487-0.702-0.0930.9451.723
13-1.970.621-1.354-2.525-1.1470.683-1.354-2.525-1.6161.134-0.83-2.525-1.3541.861-0.976-1.97
14-2.525-1.354-3.878-0.5890.7120.237-1.972.296-1.616-0.311-1.616-1.616-2.525-3.878-2.525-1.616
15-1.970.326-0.161-3.878-1.6160.621-1.616-3.878-1.97-2.525-1.616-3.878-0.9761.9061.242-1.147
16-0.976-1.97-2.525-1.3541.9740.408-2.5250.2370.683-0.83-1.3540.712-1.97-2.525-3.878-1.97
170.2820.4081.804-0.233-0.487-0.311-1.354-0.589-3.878-1.616-1.97-2.525-0.161-2.525-0.0930.621