We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSMARCA5
(GeneCards)
ModelSMCA5_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
C
Motif rank
0
ConsensusGMvKnGAAWGSARWS
Best auROC (human)0.805
Best auROC (mouse)0.565
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words410
TF familyMyb/SANT domain factors {3.5.1}
TF subfamilySMARCA-like factors {3.5.1.5}
HGNCHGNC:11101
EntrezGeneGeneID:8467
(SSTAR profile)
UniProt IDSMCA5_HUMAN
UniProt ACO60264
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.60281
0.0005 5.53331
0.0001 7.480410000000001
GTEx tissue expression atlas SMARCA5 expression
ReMap ChIP-seq dataset list SMARCA5 datasets
Motifs in JASPAR
PCM
ACGT
0115.012.0366.011.0
02297.050.043.014.0
03206.099.083.016.0
0444.023.055.0282.0
0554.0120.0135.095.0
0635.047.0318.04.0
07338.013.030.023.0
08351.014.034.05.0
0950.020.045.0289.0
1047.04.0348.05.0
1110.0125.0263.06.0
12361.05.016.022.0
13240.070.087.07.0
14142.028.027.0207.0
1521.0274.074.035.0
PWM
ACGT
01-1.826-2.0271.277-2.104
021.069-0.688-0.834-1.889
030.705-0.02-0.193-1.768
04-0.812-1.431-0.5961.017
05-0.6130.170.286-0.06
06-1.033-0.7481.137-2.925
071.198-1.956-1.18-1.431
081.235-1.889-1.06-2.758
09-0.688-1.562-0.791.042
10-0.748-2.9251.227-2.758
11-2.1870.210.948-2.615
121.263-2.758-1.768-1.473
130.857-0.36-0.147-2.49
140.336-1.245-1.280.71
15-1.5160.989-0.306-1.033