Model info
| Transcription factor | SMARCA5 (GeneCards) | ||||||||
| Model | SMCA5_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GMvKnGAAWGSARWS | ||||||||
| Best auROC (human) | 0.805 | ||||||||
| Best auROC (mouse) | 0.565 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 410 | ||||||||
| TF family | Myb/SANT domain factors {3.5.1} | ||||||||
| TF subfamily | SMARCA-like factors {3.5.1.5} | ||||||||
| HGNC | HGNC:11101 | ||||||||
| EntrezGene | GeneID:8467 (SSTAR profile) | ||||||||
| UniProt ID | SMCA5_HUMAN | ||||||||
| UniProt AC | O60264 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SMARCA5 expression | ||||||||
| ReMap ChIP-seq dataset list | SMARCA5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 15.0 | 12.0 | 366.0 | 11.0 |
| 02 | 297.0 | 50.0 | 43.0 | 14.0 |
| 03 | 206.0 | 99.0 | 83.0 | 16.0 |
| 04 | 44.0 | 23.0 | 55.0 | 282.0 |
| 05 | 54.0 | 120.0 | 135.0 | 95.0 |
| 06 | 35.0 | 47.0 | 318.0 | 4.0 |
| 07 | 338.0 | 13.0 | 30.0 | 23.0 |
| 08 | 351.0 | 14.0 | 34.0 | 5.0 |
| 09 | 50.0 | 20.0 | 45.0 | 289.0 |
| 10 | 47.0 | 4.0 | 348.0 | 5.0 |
| 11 | 10.0 | 125.0 | 263.0 | 6.0 |
| 12 | 361.0 | 5.0 | 16.0 | 22.0 |
| 13 | 240.0 | 70.0 | 87.0 | 7.0 |
| 14 | 142.0 | 28.0 | 27.0 | 207.0 |
| 15 | 21.0 | 274.0 | 74.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.826 | -2.027 | 1.277 | -2.104 |
| 02 | 1.069 | -0.688 | -0.834 | -1.889 |
| 03 | 0.705 | -0.02 | -0.193 | -1.768 |
| 04 | -0.812 | -1.431 | -0.596 | 1.017 |
| 05 | -0.613 | 0.17 | 0.286 | -0.06 |
| 06 | -1.033 | -0.748 | 1.137 | -2.925 |
| 07 | 1.198 | -1.956 | -1.18 | -1.431 |
| 08 | 1.235 | -1.889 | -1.06 | -2.758 |
| 09 | -0.688 | -1.562 | -0.79 | 1.042 |
| 10 | -0.748 | -2.925 | 1.227 | -2.758 |
| 11 | -2.187 | 0.21 | 0.948 | -2.615 |
| 12 | 1.263 | -2.758 | -1.768 | -1.473 |
| 13 | 0.857 | -0.36 | -0.147 | -2.49 |
| 14 | 0.336 | -1.245 | -1.28 | 0.71 |
| 15 | -1.516 | 0.989 | -0.306 | -1.033 |