We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSmarca5
ModelSMCA5_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
C
Motif rank
0
ConsensushWSWGvMWSvYdSTKKYh
Best auROC (human)0.668
Best auROC (mouse)0.729
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)2
Aligned words274
TF familyMyb/SANT domain factors {3.5.1}
TF subfamilySMARCA-like factors {3.5.1.5}
MGIMGI:1935129
EntrezGeneGeneID:93762
(SSTAR profile)
UniProt IDSMCA5_MOUSE
UniProt ACQ91ZW3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.87866
0.0005 11.559709999999999
0.0001 15.087710000000001
GTEx tissue expression atlas Smarca5 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.01.09.013.015.02.04.0102.01.03.012.025.014.00.010.022.0
022.034.021.04.00.04.01.01.01.07.025.02.02.033.0121.06.0
035.00.00.00.058.03.03.014.0113.01.031.023.06.02.03.02.0
043.03.0167.09.01.03.02.00.00.012.021.04.01.03.034.01.0
052.01.01.01.06.07.04.04.0108.052.033.031.04.03.05.02.0
0694.010.010.06.043.014.01.05.015.08.017.03.08.015.011.04.0
0716.02.015.0127.013.01.00.033.018.02.06.013.07.00.04.07.0
086.013.035.00.02.00.03.00.03.07.014.01.012.016.0130.022.0
092.06.06.09.010.018.05.03.033.076.060.013.00.014.07.02.0
101.08.02.034.02.011.01.0100.01.034.011.032.01.06.014.06.0
110.00.02.03.022.013.03.021.04.02.07.015.028.017.029.098.0
121.042.010.01.03.027.01.01.09.023.08.01.02.0110.012.013.0
130.01.00.014.02.06.00.0194.00.02.00.029.00.01.00.015.0
140.00.02.00.03.02.05.00.00.00.00.00.019.05.0190.038.0
151.01.05.015.00.02.02.03.013.019.037.0128.04.06.05.023.0
161.012.02.03.08.011.05.04.06.029.02.012.023.0108.016.022.0
179.03.012.014.030.022.013.095.09.06.07.03.011.014.08.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.621-2.525-0.589-0.233-0.093-1.97-1.3541.804-2.525-1.616-0.3110.408-0.161-3.878-0.4870.282
02-1.970.7120.237-1.354-3.878-1.354-2.525-2.525-2.525-0.830.408-1.97-1.970.6831.974-0.976
03-1.147-3.878-3.878-3.8781.242-1.616-1.616-0.1611.906-2.5250.6210.326-0.976-1.97-1.616-1.97
04-1.616-1.6162.296-0.589-2.525-1.616-1.97-3.878-3.878-0.3110.237-1.354-2.525-1.6160.712-2.525
05-1.97-2.525-2.525-2.525-0.976-0.83-1.354-1.3541.8611.1340.6830.621-1.354-1.616-1.147-1.97
061.723-0.487-0.487-0.9760.945-0.161-2.525-1.147-0.093-0.7020.029-1.616-0.702-0.093-0.395-1.354
07-0.03-1.97-0.0932.023-0.233-2.525-3.8780.6830.085-1.97-0.976-0.233-0.83-3.878-1.354-0.83
08-0.976-0.2330.741-3.878-1.97-3.878-1.616-3.878-1.616-0.83-0.161-2.525-0.311-0.032.0460.282
09-1.97-0.976-0.976-0.589-0.4870.085-1.147-1.6160.6831.5111.276-0.233-3.878-0.161-0.83-1.97
10-2.525-0.702-1.970.712-1.97-0.395-2.5251.784-2.5250.712-0.3950.652-2.525-0.976-0.161-0.976
11-3.878-3.878-1.97-1.6160.282-0.233-1.6160.237-1.354-1.97-0.83-0.0930.520.0290.5551.764
12-2.5250.922-0.487-2.525-1.6160.484-2.525-2.525-0.5890.326-0.702-2.525-1.971.879-0.311-0.233
13-3.878-2.525-3.878-0.161-1.97-0.976-3.8782.445-3.878-1.97-3.8780.555-3.878-2.525-3.878-0.093
14-3.878-3.878-1.97-3.878-1.616-1.97-1.147-3.878-3.878-3.878-3.878-3.8780.138-1.1472.4250.822
15-2.525-2.525-1.147-0.093-3.878-1.97-1.97-1.616-0.2330.1380.7962.03-1.354-0.976-1.1470.326
16-2.525-0.311-1.97-1.616-0.702-0.395-1.147-1.354-0.9760.555-1.97-0.3110.3261.861-0.030.282
17-0.589-1.616-0.311-0.1610.5880.282-0.2331.733-0.589-0.976-0.83-1.616-0.395-0.161-0.702-0.702