Model info
| Transcription factor | Smarca5 | ||||||||
| Model | SMCA5_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGGMvKnSRWTGGAR | ||||||||
| Best auROC (human) | 0.754 | ||||||||
| Best auROC (mouse) | 0.741 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 419 | ||||||||
| TF family | Myb/SANT domain factors {3.5.1} | ||||||||
| TF subfamily | SMARCA-like factors {3.5.1.5} | ||||||||
| MGI | MGI:1935129 | ||||||||
| EntrezGene | GeneID:93762 (SSTAR profile) | ||||||||
| UniProt ID | SMCA5_MOUSE | ||||||||
| UniProt AC | Q91ZW3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Smarca5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 87.0 | 10.0 | 38.0 | 268.0 |
| 02 | 24.0 | 0.0 | 343.0 | 36.0 |
| 03 | 18.0 | 17.0 | 362.0 | 6.0 |
| 04 | 305.0 | 75.0 | 10.0 | 13.0 |
| 05 | 204.0 | 92.0 | 75.0 | 32.0 |
| 06 | 32.0 | 37.0 | 69.0 | 265.0 |
| 07 | 81.0 | 114.0 | 127.0 | 81.0 |
| 08 | 61.0 | 71.0 | 257.0 | 14.0 |
| 09 | 289.0 | 18.0 | 74.0 | 22.0 |
| 10 | 313.0 | 20.0 | 25.0 | 45.0 |
| 11 | 23.0 | 8.0 | 53.0 | 319.0 |
| 12 | 21.0 | 7.0 | 365.0 | 10.0 |
| 13 | 16.0 | 55.0 | 321.0 | 11.0 |
| 14 | 336.0 | 35.0 | 11.0 | 21.0 |
| 15 | 270.0 | 14.0 | 103.0 | 16.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.144 | -2.185 | -0.951 | 0.969 |
| 02 | -1.389 | -4.222 | 1.215 | -1.003 |
| 03 | -1.657 | -1.71 | 1.268 | -2.613 |
| 04 | 1.098 | -0.29 | -2.185 | -1.953 |
| 05 | 0.698 | -0.089 | -0.29 | -1.116 |
| 06 | -1.116 | -0.977 | -0.372 | 0.958 |
| 07 | -0.215 | 0.122 | 0.229 | -0.215 |
| 08 | -0.492 | -0.344 | 0.927 | -1.887 |
| 09 | 1.044 | -1.657 | -0.303 | -1.47 |
| 10 | 1.124 | -1.559 | -1.35 | -0.788 |
| 11 | -1.429 | -2.376 | -0.629 | 1.142 |
| 12 | -1.514 | -2.487 | 1.277 | -2.185 |
| 13 | -1.765 | -0.593 | 1.149 | -2.102 |
| 14 | 1.194 | -1.03 | -2.102 | -1.514 |
| 15 | 0.977 | -1.887 | 0.022 | -1.765 |