Model info
| Transcription factor | Snai1 | ||||||||
| Model | SNAI1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCAGGTGb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | Snail-like factors {2.3.3.2} | ||||||||
| MGI | MGI:98330 | ||||||||
| EntrezGene | GeneID:20613 (SSTAR profile) | ||||||||
| UniProt ID | SNAI1_MOUSE | ||||||||
| UniProt AC | Q02085 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Snai1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.982 | 2.411 | 1.339 | 0.268 |
| 02 | 0.0 | 5.0 | 0.0 | 0.0 |
| 03 | 5.0 | 0.0 | 0.0 | 0.0 |
| 04 | 0.0 | 0.0 | 5.0 | 0.0 |
| 05 | 0.0 | 0.0 | 5.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5.0 |
| 07 | 0.0 | 0.0 | 5.0 | 0.0 |
| 08 | 0.268 | 0.982 | 2.411 | 1.339 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.177 | 0.532 | 0.053 | -0.902 |
| 02 | -1.413 | 1.185 | -1.413 | -1.413 |
| 03 | 1.185 | -1.413 | -1.413 | -1.413 |
| 04 | -1.413 | -1.413 | 1.185 | -1.413 |
| 05 | -1.413 | -1.413 | 1.185 | -1.413 |
| 06 | -1.413 | -1.413 | -1.413 | 1.185 |
| 07 | -1.413 | -1.413 | 1.185 | -1.413 |
| 08 | -0.902 | -0.177 | 0.532 | 0.053 |