We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSnai1
ModelSNAI1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
C
Motif rank
0
ConsensusvCAGGTGb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
MGIMGI:98330
EntrezGeneGeneID:20613
(SSTAR profile)
UniProt IDSNAI1_MOUSE
UniProt ACQ02085
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.992375
0.0005 5.475575
0.0001 7.122719999999999
GTEx tissue expression atlas Snai1 expression
Motifs in JASPAR
PCM
ACGT
010.9822.4111.3390.268
020.05.00.00.0
035.00.00.00.0
040.00.05.00.0
050.00.05.00.0
060.00.00.05.0
070.00.05.00.0
080.2680.9822.4111.339
PWM
ACGT
01-0.1770.5320.053-0.902
02-1.4131.185-1.413-1.413
031.185-1.413-1.413-1.413
04-1.413-1.4131.185-1.413
05-1.413-1.4131.185-1.413
06-1.413-1.413-1.4131.185
07-1.413-1.4131.185-1.413
08-0.902-0.1770.5320.053