We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSNAI2
(GeneCards)
ModelSNAI2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusndRCAGGTGYnn
Best auROC (human)0.985
Best auROC (mouse)0.893
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words517
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
HGNCHGNC:11094
EntrezGeneGeneID:6591
(SSTAR profile)
UniProt IDSNAI2_HUMAN
UniProt ACO43623
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.8749599999999997
0.0005 5.932185
0.0001 10.67052
GTEx tissue expression atlas SNAI2 expression
ReMap ChIP-seq dataset list SNAI2 datasets
Motifs in JASPAR
MA0745.1 (SNAI2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.012.057.03.082.04.053.025.059.020.044.07.029.04.060.014.0
0280.00.0117.00.024.00.016.00.0100.02.0112.00.025.00.024.00.0
030.0229.00.00.01.01.00.00.00.0269.00.00.00.00.00.00.0
041.00.00.00.0499.00.00.00.00.00.00.00.00.00.00.00.0
050.00.0500.00.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.00.0
070.00.00.00.00.00.00.00.00.00.00.0500.00.00.00.00.0
080.00.00.00.00.00.00.00.00.00.00.00.00.00.0497.03.0
090.00.00.00.00.00.00.00.01.0287.095.0114.00.00.02.01.0
101.00.00.00.0115.068.042.062.053.018.019.07.018.030.028.039.0
1130.046.056.055.027.024.011.054.011.028.029.021.010.021.037.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.144-0.9380.595-2.2340.957-1.9750.523-0.220.63-0.4390.339-1.454-0.074-1.9750.646-0.788
020.932-4.41.311-4.4-0.26-4.4-0.658-4.41.155-2.5841.268-4.4-0.22-4.4-0.26-4.4
03-4.41.981-4.4-4.4-3.126-3.126-4.4-4.4-4.42.142-4.4-4.4-4.4-4.4-4.4-4.4
04-3.126-4.4-4.4-4.42.759-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4-4.4
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4-4.4-4.4-4.4
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.755-2.234
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1262.2061.1041.285-4.4-4.4-2.584-3.126
10-3.126-4.4-4.4-4.41.2940.7710.2930.6790.523-0.543-0.49-1.454-0.543-0.04-0.1080.219
11-0.040.3830.5780.56-0.144-0.26-1.0220.542-1.022-0.108-0.074-0.392-1.114-0.3920.1670.244