Model info
| Transcription factor | SNAI2 (GeneCards) | ||||||||
| Model | SNAI2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRCAGGTGYn | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | 0.84 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | Snail-like factors {2.3.3.2} | ||||||||
| HGNC | HGNC:11094 | ||||||||
| EntrezGene | GeneID:6591 (SSTAR profile) | ||||||||
| UniProt ID | SNAI2_HUMAN | ||||||||
| UniProt AC | O43623 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SNAI2 expression | ||||||||
| ReMap ChIP-seq dataset list | SNAI2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 200.0 | 36.0 | 213.0 | 51.0 |
| 02 | 215.0 | 2.0 | 282.0 | 1.0 |
| 03 | 1.0 | 499.0 | 0.0 | 0.0 |
| 04 | 500.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 500.0 | 0.0 |
| 06 | 0.0 | 0.0 | 500.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 500.0 |
| 08 | 0.0 | 0.0 | 497.0 | 3.0 |
| 09 | 2.0 | 281.0 | 105.0 | 112.0 |
| 10 | 187.0 | 116.0 | 94.0 | 103.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.465 | -1.215 | 0.528 | -0.879 |
| 02 | 0.537 | -3.573 | 0.807 | -3.903 |
| 03 | -3.903 | 1.375 | -4.4 | -4.4 |
| 04 | 1.377 | -4.4 | -4.4 | -4.4 |
| 05 | -4.4 | -4.4 | 1.377 | -4.4 |
| 06 | -4.4 | -4.4 | 1.377 | -4.4 |
| 07 | -4.4 | -4.4 | -4.4 | 1.377 |
| 08 | -4.4 | -4.4 | 1.371 | -3.325 |
| 09 | -3.573 | 0.803 | -0.172 | -0.108 |
| 10 | 0.399 | -0.074 | -0.281 | -0.191 |