We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSNAI2
(GeneCards)
ModelSNAI2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusdRCAGGTGYn
Best auROC (human)0.983
Best auROC (mouse)0.84
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words500
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
HGNCHGNC:11094
EntrezGeneGeneID:6591
(SSTAR profile)
UniProt IDSNAI2_HUMAN
UniProt ACO43623
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.163765
0.0005 4.044225
0.0001 5.985405
GTEx tissue expression atlas SNAI2 expression
ReMap ChIP-seq dataset list SNAI2 datasets
Motifs in JASPAR
PCM
ACGT
01200.036.0213.051.0
02215.02.0282.01.0
031.0499.00.00.0
04500.00.00.00.0
050.00.0500.00.0
060.00.0500.00.0
070.00.00.0500.0
080.00.0497.03.0
092.0281.0105.0112.0
10187.0116.094.0103.0
PWM
ACGT
010.465-1.2150.528-0.879
020.537-3.5730.807-3.903
03-3.9031.375-4.4-4.4
041.377-4.4-4.4-4.4
05-4.4-4.41.377-4.4
06-4.4-4.41.377-4.4
07-4.4-4.4-4.41.377
08-4.4-4.41.371-3.325
09-3.5730.803-0.172-0.108
100.399-0.074-0.281-0.191