We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSnai2
ModelSNAI2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusndRCAGGTGYnbb
Best auROC (human)0.976
Best auROC (mouse)0.94
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)3
Aligned words417
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilySnail-like factors {2.3.3.2}
MGIMGI:1096393
EntrezGeneGeneID:20583
(SSTAR profile)
UniProt IDSNAI2_MOUSE
UniProt ACP97469
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.95488
0.0005 5.962105
0.0001 13.690615000000001
GTEx tissue expression atlas Snai2 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.01.042.04.065.03.052.025.056.017.034.011.018.04.046.04.0
0273.01.092.00.014.00.011.00.074.01.099.00.015.00.029.00.0
030.0176.00.00.00.02.00.00.00.0231.00.00.00.00.00.00.0
040.00.00.00.0409.00.00.00.00.00.00.00.00.00.00.00.0
050.00.0409.00.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.00.00.00.00.0409.00.00.00.00.00.0
070.00.00.00.00.00.00.00.00.00.00.0409.00.00.00.00.0
080.00.00.00.00.00.00.00.00.00.00.00.02.00.0407.00.0
090.01.01.00.00.00.00.00.09.0226.079.093.00.00.00.00.0
102.02.02.03.084.037.054.052.045.018.012.05.010.028.029.026.0
1116.031.050.044.011.014.015.045.08.032.032.025.08.016.029.033.0
1210.07.022.04.027.030.018.018.018.045.051.012.09.052.055.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.054-2.9370.491-1.780.924-2.0390.703-0.0220.776-0.4010.282-0.824-0.345-1.780.581-1.78
021.04-2.9371.27-4.234-0.59-4.234-0.824-4.2341.053-2.9371.343-4.234-0.523-4.2340.124-4.234
03-4.2341.917-4.234-4.234-4.234-2.39-4.234-4.234-4.2342.188-4.234-4.234-4.234-4.234-4.234-4.234
04-4.234-4.234-4.234-4.2342.759-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234
05-4.234-4.2342.759-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234
06-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.2342.759-4.234-4.234-4.234-4.234-4.234
07-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.2342.759-4.234-4.234-4.234-4.234
08-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-4.234-2.39-4.2342.754-4.234
09-4.234-2.937-2.937-4.234-4.234-4.234-4.234-4.234-1.0182.1661.1181.281-4.234-4.234-4.234-4.234
10-2.39-2.39-2.39-2.0391.180.3650.740.7030.559-0.345-0.74-1.574-0.9160.090.1240.017
11-0.460.190.6640.537-0.824-0.59-0.5230.559-1.130.2220.222-0.022-1.13-0.460.1240.252
12-0.916-1.258-0.148-1.780.0540.158-0.345-0.345-0.3450.5590.683-0.74-1.0180.7030.7580.19