Model info
| Transcription factor | Snai2 | ||||||||
| Model | SNAI2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRCAGGTGYnb | ||||||||
| Best auROC (human) | 0.974 | ||||||||
| Best auROC (mouse) | 0.875 | ||||||||
| Peak sets in benchmark (human) | 11 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 494 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | Snail-like factors {2.3.3.2} | ||||||||
| MGI | MGI:1096393 | ||||||||
| EntrezGene | GeneID:20583 (SSTAR profile) | ||||||||
| UniProt ID | SNAI2_MOUSE | ||||||||
| UniProt AC | P97469 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Snai2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 204.0 | 33.0 | 209.0 | 48.0 |
| 02 | 236.0 | 0.0 | 255.0 | 3.0 |
| 03 | 0.0 | 493.0 | 0.0 | 1.0 |
| 04 | 494.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 493.0 | 0.0 |
| 06 | 1.0 | 0.0 | 493.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 493.0 |
| 08 | 0.0 | 0.0 | 492.0 | 2.0 |
| 09 | 13.0 | 299.0 | 76.0 | 106.0 |
| 10 | 176.0 | 118.0 | 103.0 | 97.0 |
| 11 | 56.0 | 107.0 | 151.0 | 180.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.497 | -1.286 | 0.521 | -0.926 |
| 02 | 0.642 | -4.39 | 0.719 | -3.313 |
| 03 | -4.39 | 1.375 | -4.39 | -3.892 |
| 04 | 1.377 | -4.39 | -4.39 | -4.39 |
| 05 | -3.892 | -4.39 | 1.375 | -4.39 |
| 06 | -3.892 | -4.39 | 1.375 | -4.39 |
| 07 | -3.892 | -4.39 | -4.39 | 1.375 |
| 08 | -4.39 | -4.39 | 1.373 | -3.562 |
| 09 | -2.151 | 0.877 | -0.478 | -0.151 |
| 10 | 0.351 | -0.045 | -0.179 | -0.238 |
| 11 | -0.776 | -0.142 | 0.199 | 0.373 |