We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX10
(GeneCards)
ModelSOX10_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusdWhARdvvnbbCWTTGTbh
Best auROC (human)0.936
Best auROC (mouse)0.762
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)3
Aligned words503
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11190
EntrezGeneGeneID:6663
(SSTAR profile)
UniProt IDSOX10_HUMAN
UniProt ACP56693
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.60396
0.0005 11.748910000000002
0.0001 16.08706
GTEx tissue expression atlas SOX10 expression
ReMap ChIP-seq dataset list SOX10 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01144.041.010.052.056.02.02.013.088.01.00.011.037.010.022.011.0
0242.0208.07.068.051.01.01.01.030.00.02.02.030.028.021.08.0
03100.039.08.06.0228.01.07.01.027.00.01.03.054.00.025.00.0
04305.021.046.037.037.01.00.02.041.00.00.00.07.00.03.00.0
05128.012.093.0157.08.01.00.013.028.01.014.06.013.04.017.05.0
0656.013.092.016.07.03.05.03.031.024.055.014.048.011.0109.013.0
0744.027.066.05.019.021.08.03.0109.076.062.014.012.08.021.05.0
0825.047.055.057.018.050.019.045.039.058.042.018.07.08.08.04.0
0911.022.034.022.038.044.09.072.022.036.037.029.06.026.022.070.0
105.023.046.03.07.084.04.033.01.046.036.019.02.099.062.030.0
111.014.00.00.07.0221.01.023.06.0135.00.07.02.083.00.00.0
1210.01.02.03.0193.08.00.0252.00.00.00.01.011.00.00.019.0
130.012.09.0193.00.01.00.08.00.01.00.01.00.03.04.0268.0
140.00.00.00.00.00.00.017.00.00.00.013.00.00.00.0470.0
150.00.00.00.00.00.00.00.00.00.00.00.07.089.0403.01.0
160.00.00.07.037.02.026.024.013.02.01.0387.01.00.00.00.0
173.05.012.031.04.00.00.00.022.00.01.04.035.076.0109.0198.0
186.012.05.041.06.031.06.038.028.030.019.045.029.083.035.086.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.5180.269-1.1140.5040.578-2.584-2.584-0.861.027-3.126-4.4-1.0220.167-1.114-0.346-1.022
020.2931.885-1.4540.7710.485-3.126-3.126-3.126-0.04-4.4-2.584-2.584-0.04-0.108-0.392-1.328
031.1550.219-1.328-1.61.977-3.126-1.454-3.126-0.144-4.4-3.126-2.2340.542-4.4-0.22-4.4
042.267-0.3920.3830.1670.167-3.126-4.4-2.5840.269-4.4-4.4-4.4-1.454-4.4-2.234-4.4
051.401-0.9381.0821.604-1.328-3.126-4.4-0.86-0.108-3.126-0.788-1.6-0.86-1.975-0.599-1.77
060.578-0.861.072-0.658-1.454-2.234-1.77-2.234-0.008-0.260.56-0.7880.425-1.0221.241-0.86
070.339-0.1440.741-1.77-0.49-0.392-1.328-2.2341.2410.8810.679-0.788-0.938-1.328-0.392-1.77
08-0.220.4040.560.595-0.5430.465-0.490.3610.2190.6130.293-0.543-1.454-1.328-1.328-1.975
09-1.022-0.3460.083-0.3460.1930.339-1.2150.828-0.3460.140.167-0.074-1.6-0.181-0.3460.8
10-1.77-0.3020.383-2.234-1.4540.981-1.9750.054-3.1260.3830.14-0.49-2.5841.1450.679-0.04
11-3.126-0.788-4.4-4.4-1.4541.946-3.126-0.302-1.61.454-4.4-1.454-2.5840.969-4.4-4.4
12-1.114-3.126-2.584-2.2341.81-1.328-4.42.077-4.4-4.4-4.4-3.126-1.022-4.4-4.4-0.49
13-4.4-0.938-1.2151.81-4.4-3.126-4.4-1.328-4.4-3.126-4.4-3.126-4.4-2.234-1.9752.138
14-4.4-4.4-4.4-4.4-4.4-4.4-4.4-0.599-4.4-4.4-4.4-0.86-4.4-4.4-4.42.699
15-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.4541.0392.546-3.126
16-4.4-4.4-4.4-1.4540.167-2.584-0.181-0.26-0.86-2.584-3.1262.505-3.126-4.4-4.4-4.4
17-2.234-1.77-0.938-0.008-1.975-4.4-4.4-4.4-0.346-4.4-3.126-1.9750.1120.8811.2411.836
18-1.6-0.938-1.770.269-1.6-0.008-1.60.193-0.108-0.04-0.490.361-0.0740.9690.1121.004