We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX10
(GeneCards)
ModelSOX10_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
B
Motif rank
0
ConsensusvARdRvvnbYWTTGTb
Best auROC (human)0.91
Best auROC (mouse)0.763
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)3
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11190
EntrezGeneGeneID:6663
(SSTAR profile)
UniProt IDSOX10_HUMAN
UniProt ACP56693
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.47666
0.0005 6.42291
0.0001 8.37791
GTEx tissue expression atlas SOX10 expression
ReMap ChIP-seq dataset list SOX10 datasets
Motifs in JASPAR
MA0442.1 (SOX10; Mus musculus/Rattus norvegicus/Homo sapiens)
MA0442.2 (SOX10; Homo sapiens)
PCM
ACGT
01190.0201.084.025.0
02444.032.016.08.0
03385.016.060.039.0
04240.016.0125.0119.0
05162.039.0273.026.0
06139.082.0251.028.0
07184.0106.0152.058.0
08146.074.0161.0119.0
0925.0146.0202.0127.0
1025.0399.023.053.0
11253.022.06.0219.0
1214.037.018.0431.0
133.011.03.0483.0
1427.010.0463.00.0
1531.01.06.0462.0
1669.091.090.0250.0
PWM
ACGT
010.4150.47-0.392-1.561
021.259-1.328-1.975-2.584
031.117-1.975-0.721-1.138
040.646-1.9750.0-0.049
050.256-1.1380.774-1.525
060.105-0.4150.691-1.454
070.383-0.1630.193-0.754
080.154-0.5160.25-0.049
09-1.5610.1540.4750.016
10-1.5611.152-1.64-0.841
110.699-1.681-2.8190.555
12-2.096-1.189-1.8681.229
13-3.325-2.311-3.3251.343
14-1.489-2.3941.3-4.4
15-1.358-3.903-2.8191.298
16-0.584-0.313-0.3240.687