Model info
| Transcription factor | SOX10 (GeneCards) | ||||||||
| Model | SOX10_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bbbCTTTSTbYhh | ||||||||
| Best auROC (human) | 0.833 | ||||||||
| Best auROC (mouse) | 0.832 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group E {4.1.1.5} | ||||||||
| HGNC | HGNC:11190 | ||||||||
| EntrezGene | GeneID:6663 (SSTAR profile) | ||||||||
| UniProt ID | SOX10_HUMAN | ||||||||
| UniProt AC | P56693 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX10 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX10 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 49.0 | 167.0 | 112.0 | 172.0 |
| 02 | 15.0 | 155.0 | 129.0 | 201.0 |
| 03 | 23.0 | 254.0 | 69.0 | 154.0 |
| 04 | 13.0 | 424.0 | 6.0 | 57.0 |
| 05 | 67.0 | 39.0 | 1.0 | 393.0 |
| 06 | 1.0 | 75.0 | 18.0 | 406.0 |
| 07 | 6.0 | 23.0 | 8.0 | 463.0 |
| 08 | 15.0 | 121.0 | 328.0 | 36.0 |
| 09 | 20.0 | 3.0 | 4.0 | 473.0 |
| 10 | 14.0 | 115.0 | 118.0 | 253.0 |
| 11 | 18.0 | 239.0 | 16.0 | 227.0 |
| 12 | 64.0 | 179.0 | 62.0 | 195.0 |
| 13 | 69.0 | 237.0 | 59.0 | 135.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.918 | 0.287 | -0.108 | 0.316 |
| 02 | -2.034 | 0.213 | 0.031 | 0.47 |
| 03 | -1.64 | 0.703 | -0.584 | 0.206 |
| 04 | -2.163 | 1.213 | -2.819 | -0.771 |
| 05 | -0.613 | -1.138 | -3.903 | 1.137 |
| 06 | -3.903 | -0.503 | -1.868 | 1.17 |
| 07 | -2.819 | -1.64 | -2.584 | 1.3 |
| 08 | -2.034 | -0.032 | 0.957 | -1.215 |
| 09 | -1.77 | -3.325 | -3.126 | 1.322 |
| 10 | -2.096 | -0.082 | -0.057 | 0.699 |
| 11 | -1.868 | 0.642 | -1.975 | 0.591 |
| 12 | -0.658 | 0.355 | -0.689 | 0.44 |
| 13 | -0.584 | 0.634 | -0.737 | 0.076 |