We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX10
(GeneCards)
ModelSOX10_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
1
ConsensusbbbCTTTSTbYhh
Best auROC (human)0.833
Best auROC (mouse)0.832
Peak sets in benchmark (human)3
Peak sets in benchmark (mouse)3
Aligned words505
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11190
EntrezGeneGeneID:6663
(SSTAR profile)
UniProt IDSOX10_HUMAN
UniProt ACP56693
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.83816
0.0005 6.603760000000001
0.0001 8.094835
GTEx tissue expression atlas SOX10 expression
ReMap ChIP-seq dataset list SOX10 datasets
Motifs in JASPAR
MA0442.1 (SOX10; Mus musculus/Rattus norvegicus/Homo sapiens)
MA0442.2 (SOX10; Homo sapiens)
PCM
ACGT
0149.0167.0112.0172.0
0215.0155.0129.0201.0
0323.0254.069.0154.0
0413.0424.06.057.0
0567.039.01.0393.0
061.075.018.0406.0
076.023.08.0463.0
0815.0121.0328.036.0
0920.03.04.0473.0
1014.0115.0118.0253.0
1118.0239.016.0227.0
1264.0179.062.0195.0
1369.0237.059.0135.0
PWM
ACGT
01-0.9180.287-0.1080.316
02-2.0340.2130.0310.47
03-1.640.703-0.5840.206
04-2.1631.213-2.819-0.771
05-0.613-1.138-3.9031.137
06-3.903-0.503-1.8681.17
07-2.819-1.64-2.5841.3
08-2.034-0.0320.957-1.215
09-1.77-3.325-3.1261.322
10-2.096-0.082-0.0570.699
11-1.8680.642-1.9750.591
12-0.6580.355-0.6890.44
13-0.5840.634-0.7370.076