Transcription factor | Sox10 | ||||||||
Model | SOX10_MOUSE.H11DI.0.B | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | hvARdvvnnbCWTTGTbbn | ||||||||
Best auROC (human) | 0.936 | ||||||||
Best auROC (mouse) | 0.781 | ||||||||
Peak sets in benchmark (human) | 3 | ||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 502 | ||||||||
TF family | |||||||||
TF subfamily | |||||||||
MGI | MGI:98358 | ||||||||
EntrezGene | GeneID:20665 (SSTAR profile) | ||||||||
UniProt ID | SOX10_MOUSE | ||||||||
UniProt AC | Q04888 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Sox10 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 30.0 | 159.0 | 21.0 | 32.0 | 63.0 | 4.0 | 0.0 | 6.0 | 52.0 | 5.0 | 2.0 | 4.0 | 34.0 | 44.0 | 37.0 | 7.0 |
02 | 121.0 | 34.0 | 19.0 | 5.0 | 197.0 | 3.0 | 10.0 | 2.0 | 58.0 | 0.0 | 2.0 | 0.0 | 40.0 | 2.0 | 7.0 | 0.0 |
03 | 306.0 | 29.0 | 44.0 | 37.0 | 38.0 | 0.0 | 0.0 | 1.0 | 30.0 | 1.0 | 4.0 | 3.0 | 2.0 | 0.0 | 3.0 | 2.0 |
04 | 159.0 | 14.0 | 80.0 | 123.0 | 15.0 | 1.0 | 0.0 | 14.0 | 24.0 | 4.0 | 14.0 | 9.0 | 12.0 | 6.0 | 12.0 | 13.0 |
05 | 57.0 | 18.0 | 106.0 | 29.0 | 12.0 | 2.0 | 7.0 | 4.0 | 35.0 | 26.0 | 43.0 | 2.0 | 43.0 | 20.0 | 86.0 | 10.0 |
06 | 42.0 | 31.0 | 65.0 | 9.0 | 23.0 | 24.0 | 8.0 | 11.0 | 84.0 | 54.0 | 91.0 | 13.0 | 22.0 | 5.0 | 17.0 | 1.0 |
07 | 41.0 | 28.0 | 52.0 | 50.0 | 46.0 | 29.0 | 10.0 | 29.0 | 53.0 | 48.0 | 56.0 | 24.0 | 8.0 | 10.0 | 8.0 | 8.0 |
08 | 30.0 | 29.0 | 61.0 | 28.0 | 26.0 | 41.0 | 11.0 | 37.0 | 27.0 | 31.0 | 41.0 | 27.0 | 15.0 | 14.0 | 29.0 | 53.0 |
09 | 9.0 | 29.0 | 43.0 | 17.0 | 12.0 | 60.0 | 9.0 | 34.0 | 6.0 | 50.0 | 65.0 | 21.0 | 2.0 | 71.0 | 49.0 | 23.0 |
10 | 0.0 | 25.0 | 0.0 | 4.0 | 10.0 | 172.0 | 1.0 | 27.0 | 4.0 | 143.0 | 3.0 | 16.0 | 1.0 | 91.0 | 2.0 | 1.0 |
11 | 11.0 | 2.0 | 0.0 | 2.0 | 190.0 | 16.0 | 1.0 | 224.0 | 4.0 | 0.0 | 0.0 | 2.0 | 22.0 | 0.0 | 2.0 | 24.0 |
12 | 0.0 | 18.0 | 6.0 | 203.0 | 0.0 | 1.0 | 0.0 | 17.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 15.0 | 2.0 | 235.0 |
13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 34.0 | 0.0 | 0.0 | 0.0 | 8.0 | 0.0 | 0.0 | 1.0 | 457.0 |
14 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 5.0 | 46.0 | 448.0 | 0.0 |
15 | 0.0 | 0.0 | 1.0 | 4.0 | 3.0 | 2.0 | 14.0 | 27.0 | 6.0 | 4.0 | 5.0 | 434.0 | 0.0 | 0.0 | 0.0 | 0.0 |
16 | 1.0 | 1.0 | 2.0 | 5.0 | 5.0 | 1.0 | 0.0 | 0.0 | 18.0 | 1.0 | 0.0 | 1.0 | 54.0 | 93.0 | 79.0 | 239.0 |
17 | 6.0 | 16.0 | 11.0 | 45.0 | 4.0 | 44.0 | 3.0 | 45.0 | 5.0 | 24.0 | 5.0 | 47.0 | 16.0 | 104.0 | 24.0 | 101.0 |
18 | 7.0 | 9.0 | 9.0 | 6.0 | 52.0 | 48.0 | 4.0 | 84.0 | 8.0 | 8.0 | 12.0 | 15.0 | 24.0 | 59.0 | 84.0 | 71.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.04 | 1.617 | -0.392 | 0.023 | 0.695 | -1.975 | -4.4 | -1.6 | 0.504 | -1.77 | -2.584 | -1.975 | 0.083 | 0.339 | 0.167 | -1.454 |
02 | 1.345 | 0.083 | -0.49 | -1.77 | 1.831 | -2.234 | -1.114 | -2.584 | 0.613 | -4.4 | -2.584 | -4.4 | 0.244 | -2.584 | -1.454 | -4.4 |
03 | 2.27 | -0.074 | 0.339 | 0.167 | 0.193 | -4.4 | -4.4 | -3.126 | -0.04 | -3.126 | -1.975 | -2.234 | -2.584 | -4.4 | -2.234 | -2.584 |
04 | 1.617 | -0.788 | 0.932 | 1.361 | -0.721 | -3.126 | -4.4 | -0.788 | -0.26 | -1.975 | -0.788 | -1.215 | -0.938 | -1.6 | -0.938 | -0.86 |
05 | 0.595 | -0.543 | 1.213 | -0.074 | -0.938 | -2.584 | -1.454 | -1.975 | 0.112 | -0.181 | 0.316 | -2.584 | 0.316 | -0.439 | 1.004 | -1.114 |
06 | 0.293 | -0.008 | 0.726 | -1.215 | -0.302 | -0.26 | -1.328 | -1.022 | 0.981 | 0.542 | 1.061 | -0.86 | -0.346 | -1.77 | -0.599 | -3.126 |
07 | 0.269 | -0.108 | 0.504 | 0.465 | 0.383 | -0.074 | -1.114 | -0.074 | 0.523 | 0.425 | 0.578 | -0.26 | -1.328 | -1.114 | -1.328 | -1.328 |
08 | -0.04 | -0.074 | 0.663 | -0.108 | -0.181 | 0.269 | -1.022 | 0.167 | -0.144 | -0.008 | 0.269 | -0.144 | -0.721 | -0.788 | -0.074 | 0.523 |
09 | -1.215 | -0.074 | 0.316 | -0.599 | -0.938 | 0.646 | -1.215 | 0.083 | -1.6 | 0.465 | 0.726 | -0.392 | -2.584 | 0.814 | 0.445 | -0.302 |
10 | -4.4 | -0.22 | -4.4 | -1.975 | -1.114 | 1.695 | -3.126 | -0.144 | -1.975 | 1.511 | -2.234 | -0.658 | -3.126 | 1.061 | -2.584 | -3.126 |
11 | -1.022 | -2.584 | -4.4 | -2.584 | 1.795 | -0.658 | -3.126 | 1.959 | -1.975 | -4.4 | -4.4 | -2.584 | -0.346 | -4.4 | -2.584 | -0.26 |
12 | -4.4 | -0.543 | -1.6 | 1.861 | -4.4 | -3.126 | -4.4 | -0.599 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 | -0.721 | -2.584 | 2.007 |
13 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 0.083 | -4.4 | -4.4 | -4.4 | -1.328 | -4.4 | -4.4 | -3.126 | 2.671 |
14 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -1.77 | 0.383 | 2.651 | -4.4 |
15 | -4.4 | -4.4 | -3.126 | -1.975 | -2.234 | -2.584 | -0.788 | -0.144 | -1.6 | -1.975 | -1.77 | 2.62 | -4.4 | -4.4 | -4.4 | -4.4 |
16 | -3.126 | -3.126 | -2.584 | -1.77 | -1.77 | -3.126 | -4.4 | -4.4 | -0.543 | -3.126 | -4.4 | -3.126 | 0.542 | 1.082 | 0.92 | 2.024 |
17 | -1.6 | -0.658 | -1.022 | 0.361 | -1.975 | 0.339 | -2.234 | 0.361 | -1.77 | -0.26 | -1.77 | 0.404 | -0.658 | 1.194 | -0.26 | 1.165 |
18 | -1.454 | -1.215 | -1.215 | -1.6 | 0.504 | 0.425 | -1.975 | 0.981 | -1.328 | -1.328 | -0.938 | -0.721 | -0.26 | 0.63 | 0.981 | 0.814 |