Model info
| Transcription factor | Sox10 | ||||||||
| Model | SOX10_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bbCWTTGTbbn | ||||||||
| Best auROC (human) | 0.82 | ||||||||
| Best auROC (mouse) | 0.831 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | MGI:98358 | ||||||||
| EntrezGene | GeneID:20665 (SSTAR profile) | ||||||||
| UniProt ID | SOX10_MOUSE | ||||||||
| UniProt AC | Q04888 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox10 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 30.0 | 153.0 | 167.0 | 150.0 |
| 02 | 18.0 | 237.0 | 104.0 | 141.0 |
| 03 | 5.0 | 463.0 | 8.0 | 24.0 |
| 04 | 104.0 | 24.0 | 3.0 | 369.0 |
| 05 | 1.0 | 36.0 | 23.0 | 440.0 |
| 06 | 5.0 | 4.0 | 15.0 | 476.0 |
| 07 | 5.0 | 87.0 | 403.0 | 5.0 |
| 08 | 11.0 | 4.0 | 4.0 | 481.0 |
| 09 | 14.0 | 131.0 | 138.0 | 217.0 |
| 10 | 38.0 | 225.0 | 43.0 | 194.0 |
| 11 | 79.0 | 135.0 | 99.0 | 187.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.389 | 0.2 | 0.287 | 0.18 |
| 02 | -1.868 | 0.634 | -0.181 | 0.119 |
| 03 | -2.961 | 1.3 | -2.584 | -1.6 |
| 04 | -0.181 | -1.6 | -3.325 | 1.074 |
| 05 | -3.903 | -1.215 | -1.64 | 1.25 |
| 06 | -2.961 | -3.126 | -2.034 | 1.328 |
| 07 | -2.961 | -0.357 | 1.162 | -2.961 |
| 08 | -2.311 | -3.126 | -3.126 | 1.338 |
| 09 | -2.096 | 0.046 | 0.098 | 0.546 |
| 10 | -1.163 | 0.582 | -1.044 | 0.435 |
| 11 | -0.452 | 0.076 | -0.23 | 0.399 |